Zingiber officinale (ginger): 122045552
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Entry
122045552 CDS
T08725
Name
(RefSeq) nuclear pore complex protein NUP54-like
KO
K14308
nuclear pore complex protein Nup54
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122045552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122045552
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
122045552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nucleoporin_FG
DUF3287
DUF6270
Motif
Other DBs
NCBI-GeneID:
122045552
NCBI-ProteinID:
XP_042461752
LinkDB
All DBs
Position
2B:30855471..30884977
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AA seq
392 aa
AA seq
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MFGTPSASSTPAFGTPSSAPAFGSSPSFGTPSSSPAFGAPSSAMAFGAPSSAPSFITPTT
SLPFGTPPSTPAFGTPSSMPAFGAPLSAPAPSPLFPQQSQQQHFTIQPASLPFGNPQITT
QMAPVAPVRLSLADRDIHAIIDAYKDEPGNPKYSFRHLLLSVTDHAARVKPFGASDISWA
EAMRKLEGMDSLDRDRLWPQLVQGFKDLSDRLKLQDEVIISDAERLKMTQANVKLLQRHF
QADSFQWIQRLKQKEQTLLRRLLRVMRIVEALESKGYRIPLMKGEAELSEKLAAIARRLK
GPGTELSSRVHNLLSITRMRANSGDFRDSIHILGSAKLQEQSLCDLQEALQQENEAIARL
GNVLKRDVRDLEIIMSEGTDMLEDGRHIWKIQ
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgttcgggaccccgtcggcttcgtcaactccggccttcggcacgccttcttccgctcct
gcctttggttcttctccgtcttttggcacgccttcttcgtctccggcttttggagcgcct
tcttccgctatggctttcggcgcgccttcttccgctccatccttcatcactcctaccaca
agtcttccgttcggtacacctccttccacacctgcctttggtacgccttcatccatgccc
gcatttggagcgcctttgtcggcgccagccccttcccccctttttccacagcagtcgcag
cagcagcattttacaatccagccggcctccctcccttttggaaatcctcagataacgact
caaatggctcccgtcgctcccgtccggctttccctcgctgatcgagacatccacgcaatc
atagatgcttacaaggatgagccggggaatcctaagtactcgtttaggcatttgctgtta
agcgtcactgatcatgccgcacgggtgaaaccgtttggtgcatctgatatctcctgggca
gaggcaatgaggaagctggagggaatggacagtttagatagagacaggttgtggcctcaa
cttgtacagggctttaaagatctatccgatcgcctcaagcttcaggatgaagttattatt
tcggatgctgagaggctgaaaatgacacaagctaatgtcaagctactccaaagacatttt
caagcagacagttttcagtggattcaaagattgaaacagaaagaacaaacacttctgagg
cgtcttttgagggttatgaggatagtggaagctctggagagcaagggttacaggatacct
ctgatgaaaggtgaagctgaactgtctgagaagttggctgcaatcgcaagacgactgaaa
ggtcctggaacagagttatcgagcagagtacataatcttctttctataacccgcatgcgc
gctaactctggtgatttcagagattccatccatattctagggtcagcaaagttgcaggag
caaagcctttgtgacttgcaagaggcacttcaacaagaaaatgaagcgattgctaggttg
ggcaatgtcttgaagcgagatgtgagagatttggagatcatcatgtctgagggcacggat
atgttggaagatggtaggcacatttggaagatccaatag
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