Zingiber officinale (ginger): 122045905
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Entry
122045905 CDS
T08725
Name
(RefSeq) general transcription factor IIE subunit 1-like isoform X1
KO
K03136
transcription initiation factor TFIIE subunit alpha
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122045905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122045905
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIE
122045905
Prokaryotic type
Archaeal type
TFE
122045905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIE_alpha
Rgr-1_C
HVO_A0261_N
HVO_2248
Zn_ribbon_8
Cas12f1-like_TNB
DUF7836
Zn_ribbon_CLPX_N
Zn_ribbon_SprT
HVO_2753_ZBP
zf-HYPF
Zn_Ribbon_TF
Dimerisation
Zn_ribbon_IS1595
zf-C2HC_2
Motif
Other DBs
NCBI-GeneID:
122045905
NCBI-ProteinID:
XP_042462263
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All DBs
Position
2B:complement(74949436..74966422)
Genome browser
AA seq
476 aa
AA seq
DB search
MSSTSSSSSHGRLGLVKLAARAFYDDVSLKGDNQPKNGRGDNRGMAVIVLDALTRRQWVR
EEDLAKTLKLHAKQLRRILRYFEEEKLVMRDHRKESAKGAKIFSTAVAATGAGQQIAKDV
EEKMKLHTHSYCCLDYAQIYDVVRYRMHRMKKKIKDELDSRNTIQEYICPNCGRRYSAFD
ALQLVSLTDEYFHCENCNGELVAESDKLAAEEMGDGDDNARKRRREKLKDMLQKMEEQLK
PLAVQIARVKDLPVPEFGSLQAWEARANAAARANGDANALDPTKSSQGQGYSGTPMPFLG
ETKVEVALSGVEVKGEDDESDKKTSLMKVIPPWMIKEGMSLTKEQRGDTVNVDKSSELGD
DKKSKDTKEDEKSIQDEYLKAYYEAILKRQKEQEEALRMQQEIDRARMPDYDGVSETERQ
VGKKAKRGVYEEDNVEWEDAPPAVVSGSDEKYILADLNMEATASGDEDDDIDWEEG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctacctcctcctcctcctcgcatggcagactagggctggtgaagctcgcggcg
agggcgttctacgatgacgtctctctcaagggagacaaccagcccaagaacggcagaggc
gacaaccgaggcatggccgttatagttctcgacgcccttaccagacgccagtgggtgagg
gaagaagatttggcaaaaacattgaagcttcatgcaaagcagcttcgacgtattttacga
tattttgaagaggagaagctggtcatgagagatcaccggaaagagtcggctaaaggggcg
aaaatatttagtacagccgtggcggccacaggtgctggccaacaaatagctaaagatgtt
gaagagaagatgaagttgcacactcattcttactgttgtttggactatgcacagatctat
gatgttgtaagatatcgaatgcatcggatgaagaaaaagataaaggatgaattagacagc
aggaataccattcaggaatacatatgccccaattgcgggagaaggtattcagctttcgac
gcactacaacttgtaagtctcactgatgagtattttcactgtgaaaactgcaatggtgaa
cttgttgccgagagtgacaagcttgctgcagaggaaatgggagatggtgacgacaatgct
agaaaacggagacgtgaaaaattgaaggacatgcttcagaagatggaggagcagcttaaa
ccattggctgttcagattgcaagagtgaaggacttgcctgttcctgaattcggaagtctg
caagcatgggaagctagggcaaatgcagctgctcgtgcaaatggtgatgcaaatgcactg
gatccaaccaaatcctctcaagggcaaggatatagtggaacaccaatgccgtttcttggg
gagacaaaagttgaagttgctttatctggtgtagaagtaaagggtgaagatgatgagtct
gacaaaaagacttcgttaatgaaggttatacctccatggatgattaaagaaggaatgagt
ctaacaaaagaacaaagaggagataccgttaatgtagataaaagttctgaacttggcgat
gacaaaaaatcaaaagatacaaaagaagatgaaaagagtatacaggatgagtatctaaag
gcatattatgaagctatattaaaaaggcagaaagaacaggaagaagctttaagaatgcaa
caagagatcgatagagctcggatgcctgactatgatggtgtttctgaaacagaacgccaa
gtagggaagaaagctaaacgaggagtttatgaggaggataatgtggagtgggaagatgct
ccacctgctgttgtttcaggttcagatgaaaagtatatactcgccgacttgaacatggag
gccactgcatcgggtgacgaagacgacgacatcgactgggaggaaggctga
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