Zingiber officinale (ginger): 122045933
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Entry
122045933 CDS
T08725
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 27-like isoform X1
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122045933
03009 Ribosome biogenesis [BR:
zof03009
]
122045933
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122045933
Spliceosome [BR:
zof03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122045933
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
90S particles
Helicases
122045933
Pre-60S particles
122045933
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
SWI2_SNF2
CzcB_C
Motif
Other DBs
NCBI-GeneID:
122045933
NCBI-ProteinID:
XP_042462301
LinkDB
All DBs
Position
2B:complement(76200159..76204890)
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AA seq
581 aa
AA seq
DB search
MPSAKELVDGVKMKKSDKKRKKRPDPNQEEANTINDEDSGPPLEELNVEGNHDMSPDGKQ
ETHGDNNGDEVAEGVEGIPSTKKVKKSHGILTTEPFSRLPLSEHTMKAIQEMGFEHMTQI
QSRSIPPLLAGKEVMGAARTGSGKTLAFLIPAVEMLHNIHFMPRNGTGVIIICPTRELAI
QTHAVAKDLLQHHSQSLGLVIGGAGRRGEAEHLAKGVNLLVATPGRLLDHLQNTKGFIYK
SLMFLIIDEADRILEANFEEDMKQIFKRLPKTRQTALFTATQTKQVEDFANLSFKEKPVY
VGVDDGRSKVTVEGLQQGYCVVPSNKRFLVLYAFLKRNFSKKIMVFFSSCNSVKYHSELL
RYIHVDCLDIHGKQKQQKRTSTFFEFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDE
PKEYIHRVGRTARGEGSKGNALLFLLPEELQFLIYLKEAKVPVKEYEFNEKKVPNLQSHL
EKIVGENYFLHQSAKDAYRTYILAYNSHSMKNVFNVHQLNLKDVAASFCFTSPPKVNLDL
ESSASKFRKKMRRTDGNRHGISSSNPYGRQSGDDARQFVRH
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgccttctgccaaggagcttgttgatggcgttaaaatgaagaagtcagacaagaaacgg
aagaagagaccagatcccaaccaagaggaggccaacaccataaatgacgaagatagtggg
ccgccattggaagaactaaatgtagaagggaaccatgatatgtcccctgatggcaagcag
gaaacacatggggataataatggagatgaagttgcagaaggtgtggaggggattccttca
actaagaaggttaaaaagagccatgggatcttgaccactgagcctttctctaggctcccc
ctttctgagcacacgatgaaggctatccaagagatgggttttgaacacatgacacagatt
caatccagatctatcccacctctcttagctggaaaggaggtgatgggtgcagcaagaact
ggttcaggaaaaactcttgctttcttgattcctgcagttgaaatgctgcataacattcat
tttatgcctcggaatgggaccggggtgatcattatctgtccaactagggagcttgcaatt
caaacgcatgctgttgcgaaggatcttttgcagcaccattctcaaagccttggcttggtt
ataggtggagctgggagaagaggagaagctgagcaccttgctaagggagtaaatttgttg
gtggctacacctggaagacttttggatcaccttcaaaacacaaaagggtttatctacaaa
agtttaatgtttcttataatcgatgaagccgaccgaatattggaggctaactttgaggaa
gacatgaagcaaatatttaagcggctgccaaagacaaggcaaactgctctatttacagct
acccaaactaagcaggttgaggattttgcgaacttgtcatttaaggaaaaacctgtatat
gtaggtgttgatgatggaaggtcgaaggtgaccgtcgaagggttgcagcagggctattgt
gtcgtgcctagcaataaaaggtttctggtcttgtatgcttttcttaagaggaacttttcg
aagaagataatggtcttcttctcctcgtgcaattcggtcaagtaccattctgagcttctc
agatacattcatgttgattgtctcgatatccatggaaagcagaagcagcagaaacgaact
agcacattctttgagttctgcaaagccgaaaagggtatactgctctgcactgatgttgct
gctcgtggacttgatattcctgctgtggactggattgtgcaatatgatcctcccgatgaa
ccaaaggagtacattcacagagtcggtcgtacagcccgaggggaaggaagtaagggaaat
gctttgcttttcctactgcccgaagagttgcaatttctaatctatctgaaggaagcaaag
gttcctgtcaaagagtacgagttcaatgaaaagaaggtgccgaacctgcaatctcatctg
gagaaaatagttggagaaaactactttttgcaccaatcagctaaggatgcatataggaca
tacatcttggcctacaattcacattctatgaagaatgttttcaatgtacaccaacttaat
ctcaaggatgtagctgcttcattctgctttacctcgcctccaaaggtgaacctggatttg
gaaagcagtgcttccaagttcaggaagaagatgcgccgaactgatggcaatcgacacggg
atcagctcgagtaatccttatggaaggcagtcaggcgacgacgctagacaattcgtgcgg
cactag
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