Zingiber officinale (ginger): 122046062
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Entry
122046062 CDS
T08725
Name
(RefSeq) ubiquitin receptor RAD23c-like isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03420
Nucleotide excision repair
zof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122046062
09124 Replication and repair
03420 Nucleotide excision repair
122046062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
zof03051
]
122046062
03400 DNA repair and recombination proteins [BR:
zof03400
]
122046062
Proteasome [BR:
zof03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
122046062
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
122046062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
Rad60-SLD_2
Dsc3_N
UBA_RAD5A
TECR_N
CUE
Ubiquitin_4
Crinkler
Motif
Other DBs
NCBI-GeneID:
122046062
NCBI-ProteinID:
XP_042462497
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Position
2B:complement(82790269..82796392)
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AA seq
431 aa
AA seq
DB search
MKIFVKTLKGTNFEIDVKPEDTVAEVKKFIETSQGKTVYPAEQQMLIHQGKILKDNTTLD
ENKVSENSFLVIMLSKTKASSSGASSTTKAPANQTPAVPTPVVSPSQTPETTLPIRVPAS
SPVPTATTTPAPAAAPVPTATTTPAPAAASVPIATTTPAPAAAPVTTHLSQGFMVASYQC
NSEADAYDQAASNLVAGSTLEQTIQQIIDMGGGTWDRDTVVRALRAAYNNPERAVEYLYS
GIPEQIEPAPAARSPESGQATNPPPVQAPQPVEPPVPSGLPNANPLDLFPQGLPNLGSNV
AGGNLDFLRNSPQFRALQALVQANPQILQPMLQELGKQNPQIMRLIQEHQGEFLQLLNEP
AEGTEASGILDQLAGGMPQSLSVTPEEREAIERLEAMGFNRALVLQVFFACNKNEELAAN
YLLDHMHEFDD
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcttcgtcaagactctcaagggtactaacttcgagatcgatgtgaagcccgag
gatacggttgctgaagtaaaaaaatttattgagacatctcaagggaaaactgtctaccca
gctgagcagcaaatgcttatacatcaagggaaaatacttaaagacaatactactttggat
gagaataaagtttctgagaatagttttcttgtgattatgctcagcaagaccaaggcttct
tctagtggagcatcatccactacaaaagccccagctaatcagacacctgctgttccaacg
ccagttgtatctccatctcaaacacctgaaaccacattgcctatcagggtacctgcaagc
tcaccagttccaactgccacaactacgcctgcaccagcagcagcaccagttccaactgca
acaactacgcctgcaccagcagcagcatcagttccaattgccacaactacgcctgcacca
gcagcagcaccagttaccactcatctctctcaaggattcatggttgcttcatatcaatgc
aacagtgaagcagatgcgtatgatcaagctgcgtctaatcttgttgctggcagtactctg
gagcaaacaatccaacaaattattgacatgggtggaggaacatgggacagggacactgtt
gttcgtgccttgcgtgctgcatataacaatcctgaaagggctgttgaatatttatattct
ggcattcctgaacaaattgaacctgcacctgctgctcgatcacctgaaagtgggcaagca
accaatccaccacctgtccaggctccacaaccagttgaacctccagtcccttcaggcctt
cctaatgctaatcccctggatctctttcctcagggtctccctaatcttggttccaatgtt
gctgggggcaaccttgattttttacgtaatagcccacagtttcgtgccttacaagcttta
gtgcaggccaaccctcaaatcctacagcctatgctccaagagctagggaaacaaaaccct
cagattatgaggctcattcaggaacatcaaggggaatttcttcaattgctaaatgagcct
gctgagggaactgaagctagtggcattttagatcagttggctggtggaatgcctcaatct
ttaagtgtgactccagaggagcgtgaagccattgaacggcttgaagccatgggcttcaac
cgggcactcgtcctgcaggtcttctttgcatgcaacaaaaatgaggaactcgcagctaac
tacctcttagatcatatgcacgagttcgatgactga
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