Zingiber officinale (ginger): 122046442
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Entry
122046442 CDS
T08725
Name
(RefSeq) squalene synthase 8-like isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof00100
Steroid biosynthesis
zof00909
Sesquiterpenoid and triterpenoid biosynthesis
zof01100
Metabolic pathways
zof01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
122046442
09109 Metabolism of terpenoids and polyketides
00909 Sesquiterpenoid and triterpenoid biosynthesis
122046442
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
zof01006
]
122046442
Enzymes [BR:
zof01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
122046442
Prenyltransferases [BR:
zof01006
]
Terpene biosynthesis
Squalene/phytoene synthase
122046442
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Paralog
GFIT
Motif
Pfam:
SQS_PSY
Motif
Other DBs
NCBI-GeneID:
122046442
NCBI-ProteinID:
XP_042463079
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Position
2B:complement(96089196..96121548)
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AA seq
412 aa
AA seq
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MGLLGAIVAHPEELYPMVKLKMSMDRVRRQIPAEPHWHFSYSMLQKVSRSFALVIQQLRP
QLRNAVCIFYLVLRALDTVEDDTSIPSDIKVPILQSFYCHIYDSQWHFSCGTKEYKVLMD
KFHLVSTAFLELDRSYQEAIEDITKRMGAGMAKFICKEVETVDDYDEYCHYVAGLVGLGL
SKLFHASGSEDLASDNLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYADKL
EDFKYAENSTKAVQCLNDLVTNALMHIEDCLHYMSSLKDLSIFQFCAIPQIMAIGTLALC
YNNMQVFRGVVKMRRGLTARVIAQTETMADVYGVFFDFSSLLESKINDDDPNASLTRKRV
QAVKDRCISSGLLNKRKFHVHNRKSYTSLLIMVIVLVVAMLFSLPRRKVLVD
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atggggctgttaggagcgattgtggcgcatccggaggagctctaccccatggtgaagctt
aagatgtccatggaccgcgtgcgacgccagatcccggcggagccccactggcacttctcc
tactccatgctccagaaggtctcgcgcagcttcgctcttgtcatccagcagttacgccca
cagctccggaatgcggtctgcattttctatctggttctcagagccctagatacagttgag
gatgatacaagtataccttctgatatcaaagtacccattttgcagagcttttactgtcac
atatacgatagccaatggcatttttcatgtggcacaaaggaatacaaagttctgatggac
aaatttcatctcgtctcaactgctttcctagagcttgacagaagttatcaagaggcaatt
gaagatattaccaagagaatgggtgcaggaatggcaaagtttatatgcaaggaggtggaa
acagttgatgattatgatgaatattgtcactatgtagcaggattagttgggcttggattg
tctaagctctttcatgcttcaggttcagaagatcttgcttctgataacttgtcaaactcg
atgggtttgtttttgcagaaaacaaacattattcgagattatttggaggacataaatgag
attccaaagtctcgtatgttttggcctcgtgaaatttggagcaagtatgctgacaagctt
gaggatttcaaatatgctgagaactcgacaaaggcagtacaatgcttgaatgacttggtt
actaatgctttgatgcacatagaagattgtctgcattatatgtcttcattaaaagatctc
tcaattttccagttctgtgccattccacagattatggccattggaacactagctttatgc
tataataacatgcaggttttcagaggagttgttaagatgagaagaggattaacagctagg
gttattgcccagacagagacaatggcagatgtatatggggtcttttttgatttttcttct
ttgttggaatctaagattaatgatgatgacccaaatgctagtctaactcgtaagcgtgta
caagctgtaaaagaccgttgcatatcttctggcttgcttaacaaaaggaaatttcatgtg
cacaataggaaatcctacacttcattgctgatcatggttatcgtgcttgtagtggctatg
ctattttctttgccccgacgcaaagtattagtagattga
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