Zingiber officinale (ginger): 122046726
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Entry
122046726 CDS
T08725
Name
(RefSeq) ruBisCO large subunit-binding protein subunit beta, chloroplastic
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122046726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122046726
03110 Chaperones and folding catalysts [BR:
zof03110
]
122046726
03029 Mitochondrial biogenesis [BR:
zof03029
]
122046726
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zof04147
]
122046726
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
122046726
Messenger RNA biogenesis [BR:
zof03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
122046726
Chaperones and folding catalysts [BR:
zof03110
]
Heat shock proteins
HSP60 / Chaperonin
122046726
Mitochondrial biogenesis [BR:
zof03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
122046726
Exosome [BR:
zof04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
122046726
Exosomal proteins of other body fluids (saliva and urine)
122046726
Exosomal proteins of breast cancer cells
122046726
Exosomal proteins of colorectal cancer cells
122046726
Exosomal proteins of bladder cancer cells
122046726
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
122046726
NCBI-ProteinID:
XP_042463488
LinkDB
All DBs
Position
2B:108203412..108208117
Genome browser
AA seq
609 aa
AA seq
DB search
MASTFYAMSTFGAIASPGNFGADKKLTSRQKLSSVVSISPSLVISSRRQSFISSRRDNFK
INAMAKELYFNKDGSTIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTV
AKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGMIAEGVKVVAAGANPVQI
TRGIEKIAKALVAELKKMSKEVEDNELADVAAVSAGNNYEIGNMIADAMSKVGRKGVVTL
EEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMTAEYENCKLLLVDKKITNARDLVNVL
EDAIRGGYPVVIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGDRKSQYLDDIAILTG
GTVIRDEVGLSLDKADKEVLGTAAKIVLTKDSTTIVGDGSTQEEVNKRVAQIRNLIEAAE
QEYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGC
TLLRLSLKVDAIKESLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVTEKVLSNDNF
KFGYNAATGIYEDLMAVGIIDPTKVVRCCLEHAASVAKTFLTSDVVVVDIKEPEPVPAGN
PMDNSGYGY
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaactttctatgcaatgtctacttttggtgctattgcttctcctggaaatttt
ggagcagacaagaagttaacttctagacagaagctttcttctgttgtttctatatcacct
agtttagtcatcagtagcaggaggcaaagcttcatttcttcgaggagagacaactttaag
attaatgccatggccaaggaattatacttcaataaagatggctcaacaattaaaaagtta
caaactggtgtaaacaagcttgctgatcttgttggggttactcttggcccaaagggcagg
aatgttgtattggaaagcaagtatggatcacctaagattgtgaatgatggtgttacagta
gcaaaagaggttgagttagaggatcctgtcgagaacattggtgccaaactagtaaggcaa
gcggctgctaagactaatgatttggctggggatgggacaactacatctgttgttcttgct
caaggaatgattgctgaaggtgttaaggtagttgcagctggtgctaatcctgttcagatt
acccgtggtattgaaaaaattgccaaagctctagttgctgaacttaagaagatgtctaag
gaggttgaagacaatgaacttgcagatgttgcagctgttagtgctggtaacaattatgaa
attggcaatatgattgccgacgcaatgagcaaggttgggaggaagggagtagttactctt
gaagaagggaaaagtgctgaaaataatctctatgttgttgagggaatgcaatttgatcgt
ggatatatttccccatactttgtgactgacagtgaaaagatgactgctgagtatgagaat
tgcaagttgcttcttgttgacaagaagatcacaaacgcaagggatctagtcaatgtcttg
gaagatgctatacgaggggggtacccagttgtcataatcgcagaggatattgaacaagaa
gctctagcaacgctggttgtgaataaattaagaggggcattaaagattgctgcacttaaa
gcccctggatttggggaccgcaaaagtcagtaccttgatgacatcgcaatactgacggga
ggtactgtgatcagagatgaggttggtctttccctggataaagctgacaaagaggttttg
ggtactgctgccaagattgtgcttactaaggattcaaccaccatagtcggtgatgggagt
acacaggaggaagtcaataaaagagtcgcacagatcagaaacctgattgaggctgctgag
caagagtatgagaaggaaaagctcaacgagagaatagcaaagctatctggtggtgttgct
gttattcaggttggagcacagacggaaacagaactaaaagagaagaaattgagagttgaa
gatgcccttaatgctacgaaggctgctgttgaggaaggtattgtagttggtggcggttgc
acgttgttgaggctttcactgaaagttgatgccatcaaggagtctctcgagaatgatgag
caaaaggttggggcagatatagtaaagagggctttgagctaccctctgaagttgattgct
aaaaatgctggtgtcaacggaagtgtagtcaccgaaaaggtcttgtcaaatgataacttc
aaatttggttacaacgccgcaactggcatatacgaggacttgatggctgtggggataatc
gaccccaccaaggttgtgaggtgttgtttggagcatgctgcttcagtagcgaagactttc
ctcacttctgatgtggtggttgtcgacatcaaggaaccggagcctgttccagcagggaac
ccaatggacaactcaggttatggctactaa
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