Zingiber officinale (ginger): 122046924
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Entry
122046924 CDS
T08725
Name
(RefSeq) symplekin-like
KO
K06100
symplekin
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122046924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122046924
03019 Messenger RNA biogenesis [BR:
zof03019
]
122046924
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122046924
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
122046924
U7-dependent histone pre-mRNA processing factors
122046924
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
Motif
Other DBs
NCBI-GeneID:
122046924
NCBI-ProteinID:
XP_042463818
LinkDB
All DBs
Position
2B:118658762..118701710
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AA seq
957 aa
AA seq
DB search
MARTIYRVSHEIRSNKGEPPAIQELQTGNQIRNKISRLSGAALSEELPAKRIEFEVPLSM
AHSTHMTSDLPDDNDDGNGDYSSNTSLANGDLSAAEKMIAMIGALLAEGERGAESLELLI
SNIHADLMADIVIETMKHLPKNLMAVSVWHNNAQLNEETPSSSISSQVVPTAAIVSAPTP
LPAELASTAVGTNGVGIFSPDTSTVSNLAVEVRRDPRRDPRRLDPRRPGPVGSLHSAPLN
SVNSSDAQTVPSQLSSKAVPTSETVIVEQSSMPLTYKTEVELSEIPDTQRTGKIQSLEAS
EVQDNAMAMEQTSDVHTPPNLTCEQTVEEQLAESTPSDATANDDVYNLPESDEFASPDIN
SMVPEEDFHNLIAHPSLLELKDEQRSNLHRLTVTRIIKDYKKFHVTGSSQPCLPLLARLV
AHSGADDDILMFLEEHIVLDYPHHKGHELAMHVLYYLQAIVISKVDNCSSVATSYEKFLL
GIAKALLDSFPATDKSFSKLLVEAPILPDSSLKLLEDLCHANYNEHHLEETRDGDHVTQG
LVATWGLILGRPSYRQACLDIALKCALHPQEEVRAKAIRLVANKLYLLNYASDSIEQFAM
QMLLSVVEQQNFEEDISTQNSNDQQTEDELICGPRPSEPASSESENNKDNQASVMKKPIL
LQFVFDIYGKAPKVVKQSIHQHIPVIVKNLSTYSHLLKIFSDPPEGSKILIVLVLETLTE
EATPSSELIATVKHLYETKLKDAVILIPMLSSFSKDEVLPIFPRLVDLPLEKFQAALARI
LQGSAHTGPALTPAEVLIAIHNINHQKDGVALKKITDACTACFEQRIVFTQHVLEKSLNH
LVEQVPLPLLFMRTVIQAIDAFPSLVDFVMGILSKLVTKQIWKMPKLWVGFLKCAAQTQP
RSFDVLLQLPSLHLESALNRHPNLRTPLAAYANQPNLRTSLPWQSLKVLGVLDENTR
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaactatatatcgtgtatcccatgaaattcgttccaataagggggaaccacca
gctattcaagaactgcaaacggggaatcagattaggaacaagatttcacgactctcaggt
gctgctctttctgaagagttgcctgctaagagaatagaatttgaggtaccactgagtatg
gcacattctacacatatgacatcagatttgccagatgataatgatgatggaaatggtgat
tattcatcaaacacttctctagcgaatggtgacttatcagcagctgaaaagatgattgcc
atgatcggtgctctcctggctgagggggaaagaggggctgaatcccttgagcttcttatt
tccaatattcatgctgaccttatggcagatatagttatagaaactatgaagcatctcccc
aagaacttaatggcggtatcagtctggcacaataatgcacaattaaatgaagagactccc
tcttccagcatttcttcacaggttgtgccaaccgctgcaattgtttctgcaccaactcca
ttacctgctgaattggcatccactgctgtagggacaaatggagttggcattttcagtcct
gatacatctactgtctctaaccttgctgttgaagttagaagggatcccaggagggatcct
cgtcgtcttgatccacgtcggccagggccagttggaagtctacactctgcacctttgaac
tcagtgaatagcagtgatgcacaaactgtaccatctcagctatctagtaaagctgttcct
acttcagaaactgtcattgttgaacaatcttccatgccattgacttacaaaactgaggtg
gagctttctgaaataccagatactcagagaacaggaaaaatacaatcattagaagcctca
gaagtccaggacaatgccatggctatggagcaaacttcagatgtccatacaccaccaaac
ttaacttgtgaacaaactgttgaagaacagctggcagagtctacaccatcagatgctaca
gctaatgatgatgtttataatcttccagaatccgatgaatttgcttcccctgatattaac
tcaatggtccctgaagaggattttcataatttgattgcacatccatctctacttgagtta
aaagatgagcagagaagcaatctgcacaggttaactgttactcggattatcaaagattac
aagaaattccatgtcacaggatctagtcaaccatgccttccattgcttgctcgtctggtt
gcacatagtggggctgatgatgacattcttatgtttttagaagaacatattgtattggat
tatcctcatcacaagggccatgaacttgcaatgcatgtcctctattacctgcaagcaata
gtgatttccaaggtagacaattgttcctcagtggctactagttacgagaaatttcttctg
ggaattgcaaaggcattgttggattcctttccagctacagataaatccttcagtaaactg
cttgttgaagctccaatactgcctgactcttcattgaaattgttggaggatttgtgccat
gcaaattataatgagcatcatttagaagaaacacgtgatggtgatcatgtcactcaaggt
cttgttgcaacatggggcttaattttgggacgtccttcttatagacaagcttgcttggat
attgccttgaagtgcgcccttcatcctcaggaagaagttagagctaaagctattcgattg
gttgcaaacaagctttatcttctgaactatgcttcagatagtattgaacagtttgctatg
caaatgctactatcagttgttgagcagcaaaattttgaggaggatatcagtactcaaaac
tcgaatgaccaacaaacagaagatgaacttatttgtggccccaggccttcagagcctgct
tcttctgagagcgaaaataataaagataatcaagcttctgtgatgaagaaaccaattctt
ctccaatttgtatttgacatatatgggaaggctccaaaggttgtcaagcagtctattcat
caacacattccagtcattgtaaagaatcttagtacatattctcacctattgaaaatattc
tctgatcctccagaaggaagtaaaattctgattgttttggtcttggaaactctaactgaa
gaggcaacaccttcgtctgagttaattgccacagtcaagcatctttatgagactaaactg
aaggatgcggttattctcattccaatgctgtcttctttttcaaaggatgaggtgttgcct
atctttccacgtctagttgatcttcccttggagaaatttcaagctgctttagctcgcatt
ttgcagggatctgcacatactggtcctgcattaactcctgctgaagtattgattgcaatt
cacaatattaatcatcagaaagatggtgttgcacttaagaagataacagatgcttgcaca
gcatgttttgagcaacgtatagttttcactcagcatgttctagaaaaatcattgaatcat
ttggttgagcaagtgcccctccctcttcttttcatgagaactgttattcaagcaatagat
gcctttccatctctggttgattttgttatgggtatactttcaaagttagtgacaaagcag
atatggaagatgccaaaattatgggtgggatttctgaaatgtgctgcacagacacaacct
cgttcttttgatgttctacttcagttgccatcacttcatcttgagagtgctttaaatcgg
catcctaacttacggactccgcttgctgcttatgctaatcaaccaaacttgaggacttca
ctaccatggcaaagcctcaaggtgttgggtgttcttgatgaaaacacaagatga
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