Zingiber officinale (ginger): 122047185
Help
Entry
122047185 CDS
T08725
Name
(RefSeq) prolycopene isomerase 1, chloroplastic-like
KO
K09835
prolycopene isomerase [EC:
5.2.1.13
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof00906
Carotenoid biosynthesis
zof01100
Metabolic pathways
zof01110
Biosynthesis of secondary metabolites
Module
zof_M00097
beta-Carotene biosynthesis, GGAP => beta-carotene
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
122047185
Enzymes [BR:
zof01000
]
5. Isomerases
5.2 cis-trans-Isomerases
5.2.1 cis-trans Isomerases (only sub-subclass identified to date)
5.2.1.13 prolycopene isomerase
122047185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Amino_oxidase
NAD_binding_8
DAO
FAD_binding_2
FAD_oxidored
Thi4
GDI
GIDA
HI0933_like
Pyr_redox_2
FAD_binding_3
GMC_oxred_N
Pyr_redox_3
MCRA
Motif
Other DBs
NCBI-GeneID:
122047185
NCBI-ProteinID:
XP_042464234
LinkDB
All DBs
Position
2B:complement(130146657..130151890)
Genome browser
AA seq
596 aa
AA seq
DB search
MLRLAPPLLVAATCPAVNTDGFPLRRRILALLPLASRRSSSRALRSASGILRMPPVAVLS
PERAIQRGASEKGEAGEEYDAIVIGSGIGGLVAATQLAAKGARVLVLEKYVIPGGSSGYY
ERDEFTFDVGSSVMFGFSDKGNLNLITRALAAVGHKMQVIPDPTTVHFHLPGELSVRVHR
EYNDFIEELISKFPHEKVGINKFYDECWKIFNALNSLELKSLEEPIYLFGQFFKKPVECL
TLAYYLPQNAGDIARKYIKDSQLLSFIDAECFIVSTVNALQTPMINASMVLCDRHFGGIN
YPVGGVGGIARALADGLVTKGSNILYKANVTNIILKDGKAVGVRLSDGREFFATTVISNA
TRWDTFGKLVKTDEIPEEEKNFQRVYVKAPSFLSIHMGVKATVLPPETDCHHFILEDDWA
NLERPYGSIFLSIPTVLDSSLAPEGHHILHIFTTSSMDDWKGLNSKDYEKKKELVADEII
SRLENKLFPGLKNSIVLKEVGTPKTHRRFLARDSGTYGPMPRHIPKGLLGMPFNTTAIDG
LYCVGDSCFPGQGVIAVAFSGIMCAHRVAADIGLEKRSPVLDAALLRLLGWLRTLA
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgctccgtttggccccgccgctgcttgtcgcagccacctgtccggccgtcaacaccgat
gggttccccctccggaggcgaattctagctttgctccctttagcatctaggcggagctca
agccgggccttgaggtcagcgtccgggatccttcggatgcccccagtcgccgtcctgagc
cccgagagggcgatccagagaggtgcgagcgagaagggagaggcgggagaggagtacgac
gcgattgtgatcgggtccgggatcggcgggctcgtggcggcgacgcagctggcggccaag
ggagctagggttctggttctggagaagtatgtcatccctgggggaagctctgggtactac
gagagggatgaatttactttcgacgtcggttcgtccgtgatgtttggttttagcgataag
ggcaacctgaacctaatcacacgagcattagcagcagttggtcataagatgcaggtcata
cctgatcctaccaccgttcacttccaccttcctggtgaactgtctgttcgtgtgcatcgt
gagtataatgacttcatcgaggaactaatcagtaaattcccgcatgaaaaagtgggaata
aataagttttacgatgagtgctggaagatcttcaatgcactgaattcattggaactgaag
tcactggaagagcctatatatctctttggacagttcttcaagaagccagtcgaatgcttg
actcttgcttattacttgccacaaaatgcgggggatatcgctcggaaatatataaaggat
tctcagttattatcattcattgacgctgagtgtttcattgtgagtacagtaaatgcgttg
cagacaccaatgatcaatgccagcatggtcttgtgcgacagacactttggagggattaat
tatccagtcggcggtgttggtggtattgctagggctttggcagatgggctagttactaag
ggaagcaacatactttacaaggcaaatgtgaccaatataatactgaaagatggaaaggct
gtgggagtgaggctctcagatggaagggaatttttcgctactacagttatctcaaatgca
acaagatgggataccttcggtaaacttgtgaaaacggatgaaataccggaagaggagaaa
aactttcaaagagtttatgtcaaggcaccgtcttttctttccattcacatgggagtcaaa
gctacagttttgcctcctgaaacagattgccatcatttcattcttgaggatgattgggca
aatttagagaggccttatggaagcatatttttgagcattcctactgttcttgattcatct
ttggccccagagggacatcacattctccacatttttaccacatcttccatggatgactgg
aagggcctcaattcaaaggactatgaaaagaaaaaagaacttgtggctgatgaaattata
tcaaggcttgaaaataaactcttccctggtctcaaaaactctatagtgcttaaagaggtg
ggtactccaaagacccacagaagatttcttgctcgagacagtggtacatatgggccaatg
ccacgccatattccaaaaggattacttgggatgcccttcaacactactgcaatcgacggt
ctctactgtgttggcgatagctgttttcctggacaaggagttatcgctgttgccttttct
ggaatcatgtgcgctcacagagttgctgctgatataggtcttgagaaaagatctccagtg
ctggatgctgctcttcttcgcttacttggctggttgaggacactggcttga
DBGET
integrated database retrieval system
