Zingiber officinale (ginger): 122047286
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Entry
122047286 CDS
T08725
Name
(RefSeq) ubiquitin receptor RAD23d-like isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03420
Nucleotide excision repair
zof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122047286
09124 Replication and repair
03420 Nucleotide excision repair
122047286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
zof03051
]
122047286
03400 DNA repair and recombination proteins [BR:
zof03400
]
122047286
Proteasome [BR:
zof03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
122047286
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
122047286
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
UBA_RAD5A
Rad60-SLD
A_thal_3526
Dsc3_N
TECR_N
STI1-HOP_DP
Motif
Other DBs
NCBI-GeneID:
122047286
NCBI-ProteinID:
XP_042464388
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Position
2B:complement(132200280..132228982)
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AA seq
393 aa
AA seq
DB search
MRLSVKTLKGTSFEIDANPGDTVVDVKKSIETSQGESVYPAGQQMLIHQGKILKDDTTLA
DNEVSDNSFLVIMLSKTKGSSSGVMTAKAPLSQAPPTNAAAPVHSVPASVPSQTSASTLS
IAPIDTATPTATATAASITSNPTEDDPYSQVASNLVAGSNLEQTIKQILAMGGGAWERGT
VIRALHAAYNNPERAVEYLYSGIPENAEAQTVAQVPPSGQTLSSTVEALPSVQSSVPSSG
PNSSPLDLFPQGLPNFGSNAGGGSLDFLRDNPQFQALQALIQANPQILQPMLQELGKQNP
QFMRIFQEHQGEFLRLLNQPAEGTEAEGNLLGQLDAAMPEALVLVTDEERIAIERLESLG
FSRAAVLQAFFACDKNEELAANYLLDHMHEFEE
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgaggctttccgtgaagactctcaagggaaccagcttcgagatcgacgccaaccctggc
gacacggttgttgatgttaaaaaaagtattgagacatctcaaggagaatctgtttatcca
gctgggcagcagatgcttatacatcaaggaaaaatcctaaaagatgatactacattggcg
gataatgaagtatctgataatagctttcttgttataatgctgagcaagactaagggttca
tctagtggagtaatgactgcaaaagcacctttaagtcaggctccacccactaatgcagct
gccccagtccattcagttccagcatctgttccatctcaaacatctgcatcaacattatca
atagcacccatagatacagcaaccccaactgccactgctaccgcagcctcaataactagc
aaccccactgaagatgatccttacagtcaagttgcatcaaatcttgttgctggtagcaac
ttggaacaaaccatcaaacaaattcttgccatgggtgggggggcttgggaaaggggcact
gttattcgtgccttgcatgctgcatataataatcctgagcgtgcagtcgaatatctatac
tctggtattcctgagaatgccgaagcccaaaccgttgcacaggtacctcctagcgggcaa
actctcagttctacagtcgaagctctgccatcagttcagtcttcggttccttctagtggt
cctaattctagccctttggacctctttccccagggccttcccaattttggatcaaatgct
ggtgggggcagccttgattttttgagggataatccacagttccaagctttgcaggctttg
atccaggcaaatccacaaatcttacagcccatgctgcaagagttggggaaacaaaatcct
cagtttatgaggatctttcaggaacatcaaggagagttccttcgattattaaaccaacct
gctgagggtactgaggctgagggaaatcttctcggtcaattggatgctgcaatgccagaa
gcccttgttctcgtcactgatgaggagcgcatagccattgaacgtctcgagtcattgggc
ttcagtcgcgctgctgtgttgcaggcgttctttgcttgcgacaagaacgaggagctcgcc
gccaactatcttctggatcatatgcacgagtttgaggaataa
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