Zingiber officinale (ginger): 122047438
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Entry
122047438 CDS
T08725
Name
(RefSeq) transcription factor IIIB 60 kDa subunit-like isoform X1
KO
K15196
transcription factor IIIB 90 kDa subunit
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122047438
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase III system
Basal transcription factors
TFIIIB
122047438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
BRF1
Zn_Ribbon_TF
Fer4_12
BRF2-like_C_cyclin_rpt
Motif
Other DBs
NCBI-GeneID:
122047438
NCBI-ProteinID:
XP_042464678
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All DBs
Position
2B:complement(138954799..138974968)
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AA seq
623 aa
AA seq
DB search
MGWCSHCDDECPIFRDPDNGYVCCALCGRILDQDIYYTGPTFAKDSSGQSQLTGNLMKIL
QHELSGSYERTLKRGKDEISYIVSGLDISGGDPLIDNAHVFYQLAVDKNFTKGRRLPYVA
AACLYLACRQRKMAYLLIDFSDYLQISVYVLGAVFLQLCKTLKLLEHPIVQNIVDPSLFI
NRFTERLLGRKNNAVSDTALRLVASMKRDWMQTGRKPNGLCGAALYISVHSHGLNYSKSD
IGSVVHICEATLTRRLLEFESTESGSLTMEEFLFRAEDVDGESPSIQLPKPGKLLCQHKE
TDAPHFAHGLCKECYDEFIEISGGLQGGTDPPAFQRAEKQRMEKIKLPDESNLDNQETNE
KHINIPNEGSCDVNSTSYVSPVEGKPSKELRSADPAGHESIDPSTFSEQYGFSDSENDGS
DHFSDIDDAEVNGYLHTEKEKELKKIIWEEMNKEYLEEQAAKEAAAAAAKEAYEAMYANA
SEDLLAAKELVEATDAALVKSKKEKKQRRIAEVKNMIPARTPLEAVRRMLMKKTFSAKVN
YEALETMFSSEQNHAKKQKVELDVGDPHETLDKKDDHADILDNKDDDGPGASDNDNYDVN
YDDYKGGNDEYDYGDEDHDYEDF
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgggttggtgtagtcattgtgacgacgaatgcccaatctttagggatcctgacaatgga
tatgtgtgctgtgccttatgtggaaggattctcgatcaagatatttactacactggtccc
acttttgcgaaggatagtagtggtcagagtcaactaactggtaatctcatgaagattttg
caacatgaattatctggatcatatgaaagaactctaaagagaggaaaagatgagattagc
tatattgtaagtggcctggacattagcggcggagatcctttaatcgacaatgcacatgtt
ttctatcagttggcggtagataagaatttcaccaaaggacgcaggctaccttatgttgca
gcagcttgtctctatcttgcttgcaggcaacggaaaatggcctatcttctcattgatttt
tctgactacttgcagataagtgtatatgtgcttggagctgtgtttttgcaactttgtaaa
actttgaagctcttggagcacccaattgtccagaatatagtggatcctagtctttttatc
aatcgatttacagagcgacttttaggcagaaagaataatgcagtttctgatacggctctt
cgcttggttgcaagcatgaaaagagattggatgcagacagggaggaaacccaacggatta
tgtggtgcagcattatacatatctgtacattctcatggacttaattactccaaatcagat
attggttctgttgtacacatttgtgaagcgactctaactagacgactactagagtttgaa
agtacagagtctggtagcttaactatggaggagttcctttttagggctgaagatgtagat
ggagaatctccatccattcaattacctaagcctggtaaacttttatgtcagcacaaagaa
actgatgcacctcattttgctcatggactttgcaaggaatgttatgatgagttcattgaa
atatccgggggacttcaaggtggtactgatcctccagcctttcaacgtgctgagaagcag
aggatggaaaaaataaaattaccagatgaatccaacctagataaccaggaaacaaatgag
aagcatataaatatccctaatgagggaagctgtgatgttaattcgacttcatatgttagc
cctgttgaaggaaaaccatcaaaggaacttcgaagtgctgatcctgcagggcatgagtcg
attgacccatcaactttcagtgaacaatatggtttttcagactctgaaaatgatgggagt
gatcatttttctgacattgatgatgctgaggtaaatggatatctacacactgagaaagag
aaggaacttaaaaagattatatgggaagaaatgaacaaagagtatcttgaggaacaagca
gcaaaggaagctgctgctgcagctgccaaggaggcatatgaagcgatgtatgcaaatgct
tcagaagatttgctagccgcaaaggaacttgtggaagcaactgatgcagctctagtaaaa
tctaaaaaggaaaagaaacaaagacgtattgcagaagttaaaaatatgattcctgcacgg
actcctcttgaagcggtacgtcggatgcttatgaaaaagactttcagtgcaaaagtcaac
tacgaagcgttggaaactatgttctcgtccgaacaaaaccatgcaaaaaagcaaaaagtt
gaattggatgttggtgatcctcatgaaactctcgacaagaaagatgatcatgcagatatt
ctagataacaaggatgatgatgggccaggagcatctgacaatgataattatgatgttaat
tatgatgattacaagggaggtaatgatgaatatgattatggagatgaagaccatgattat
gaggatttttga
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