Zingiber officinale (ginger): 122047507
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Entry
122047507 CDS
T08725
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof00040
Pentose and glucuronate interconversions
zof01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122047507
Enzymes [BR:
zof01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
122047507
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
DUF7446
Motif
Other DBs
NCBI-GeneID:
122047507
NCBI-ProteinID:
XP_042464792
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All DBs
Position
1B:4304195..4306451
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AA seq
326 aa
AA seq
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MGALPYAHVDTSLRALAGQAEGFGRFAIGGLHGPAYYVTSLADDGPGSLREACRIREPLW
IVFEVSGTIHLSSYLRVSSYKTIDGRGQRIKLTGKGLQLKECEHVIVCNLEFEGGRGHDV
DGIQIKPKSRHIWIDRCSLQDYDDGLIDITRESTDITVSRCRFANHDKTMLIGADKSHVT
DRCIRVTIHHCFFDGTRQRQPRLRFGKVHLYNNYTRNWSIYAVSASVEAQILSQCNIYEA
GQKKLVFRYMPEKAADREQVKAGWIRSEGDMFLNGTQLGLLDAGAQSVFDPSEHYPPWTV
EPASLALKEVLQLCTGWQAIPRSNDC
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccttgccttacgctcacgtcgacacgagcttgcgtgccctcgccggacaagca
gagggcttcggccgattcgctatcggaggcctccatggaccggcctactatgtcacctcc
ttggcagatgatggtcctggttcacttcgtgaggcatgccgcattagagagccactctgg
attgtttttgaagtttcaggaaccattcacctttcttcatacctgagggtatcatcatat
aagactattgatggtcgaggacagaggataaaattgactggcaaaggtttacaactgaaa
gaatgtgaacatgtaatcgtttgcaatctggaatttgaaggtggcagagggcatgatgtt
gatggtattcagataaagcccaagtcgaggcatatttggatagaccgctgcagcttacaa
gattatgatgatggactgatcgatatcactcgcgaaagtactgatatcactgtttcaaga
tgccgcttcgccaatcatgacaagacgatgcttattggagcagacaagagtcatgttact
gatagatgtattcgcgttaccattcaccattgcttcttcgatggaacaagacagagacaa
cctcgacttagatttggcaaagttcacctttacaacaattacacaagaaactggagcata
tatgctgtctctgccagtgtagaagcacagatattgtctcaatgcaatatttatgaagca
ggacaaaagaagttggtatttaggtacatgcctgagaaggcagccgatcgggaacaggtg
aaggcgggttggataaggtccgaaggcgacatgtttttgaatggcacccagcttgggttg
ttagatgctggtgctcaaagtgttttcgatccctcagaacactatccaccatggactgtg
gaacctgcatcactggctcttaaagaagtcctccaattatgcactggatggcaagctatc
ccaaggtcaaatgattgttga
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