Zingiber officinale (ginger): 122047625
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Entry
122047625 CDS
T08725
Name
(RefSeq) transport inhibitor response 1-like protein Os05g0150500
KO
K14485
transport inhibitor response 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
122047625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122047625
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
122047625
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
Nop53
LRR_At5g56370
F-box-like
F-box
LRR_14
Motif
Other DBs
NCBI-GeneID:
122047625
NCBI-ProteinID:
XP_042464951
LinkDB
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Position
2B:144914241..144921741
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AA seq
763 aa
AA seq
DB search
MGKTAKGSRKGKKAWRPDITTNHIDDYFDESIRDAFTGKASETKSTDKIPVKRKIEKHKK
KVLHYDSLLQKNPFAVPSSSSKKSKRKKKQVNTQIIETDKSSQVDDITSTLTDIWNNEGQ
ATDMPKKKQKSSIIQAVEVEPLGCSFNPSFEAHQDSFSLAVVSEMQKIYRKELGPQAVPK
TVPGEAIADEDDRAFAWVATLPDEVWEHTFSFLPNNVDRHAVALVCRSWYRIERVSRRKI
FVGNCYAVAPAEAVRRFPEVRVATIKGKPHFADFNLVPNDWGGAAGMWIQSMALGWPLLE
ELCLKRMVVSDDCLKLIARSFKNFRVLSLAFCEGFSTAGLAAIAANCRNLKALDLHQYKV
KENCINWISHFPESFTSLVTLNIACLDGEMNASILERLISRCPNLKTLRLNHVTSLEKLV
GLLHRAPQMVDLGISILIGGHPGLFSKLESAFAHLKHLKNLSWKAGPLYLPAIYSICEGL
TTLQLFDSSILAPELSKVVSQCKNLQQLWVMDLIEDNGLIAVASSCKLLRKLRIFPSDPP
YCPLTEIGLIAVSSGCVMLESILYFCRKMTNSALLTIANNRPNLTCFRLCIIRPYTPDYI
TQEPLDVGFGAIVESCKDLRRLSLSGRLTDLVFKTIGASANRLERLSVGFAGDCDAGLHY
ILSGCRKLRILEIRKCPFGIKALLDNADKLETMRCLWMSSCSVTLGACRLLAKKMPRLNV
EVIDENGGRSLDLMPDHFPVQKLYIYSTIAGPRSDAPPFVLTV
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atggggaagacggcgaagggatcgcggaaggggaagaaggcatggaggcccgatatcacc
accaaccacatcgacgattacttcgacgagtccatcagggacgccttcaccggcaaggct
tccgagacgaaatccactgacaaaattcctgtgaaaagaaaaattgagaaacacaagaaa
aaagttctccattatgatagcttgcttcagaaaaatccttttgctgttccatcgtcttct
tcaaaaaaatcaaagcggaaaaagaaacaagtgaacacacaaataatagagactgacaaa
tcttcacaggtagatgatataacttccactctaactgacatatggaataatgaaggtcaa
gcaactgacatgcctaaaaagaaacagaagtcatctatcattcaagctgtcgaagtggaa
ccacttggttgttcatttaatccttcatttgaggctcatcaagattcattttctctagct
gttgtcagtgagatgcagaaaatttacagaaaagaattgggtcctcaagctgtaccaaaa
acagttccaggtgaagcaattgcagatgaagatgacagggccttcgcttgggtggccacc
ttgcccgacgaggtgtgggagcacactttctctttcctcccgaacaacgttgatcgccat
gccgttgccctagtctgccgctcttggtatcggattgaacgggtgtcgaggcggaagatc
ttcgtggggaattgctatgcggtcgcgccggccgaggcagtgcggcgattcccagaggtc
agggtggcgaccatcaaggggaagccgcattttgctgatttcaacctagtgcccaacgac
tggggcggtgcagcggggatgtggatccagtcgatggccttggggtggccgcttctcgag
gaactttgcctcaagcgaatggtggtctctgatgattgtctcaagcttatcgcccggtcc
tttaagaactttagggttctgtctctagcattctgcgaagggttcagcactgccgggctg
gccgccattgcagccaattgcaggaatttgaaggcacttgatctgcatcaatataaagtg
aaggagaattgtataaactggatatctcattttccagaatcctttacttcccttgttact
ctcaacattgcatgtctggatggtgagatgaatgcatctattcttgagcgcctcattagc
agatgtcccaatctcaagaccctcagactcaatcatgtcacttctctagaaaaacttgtt
ggccttctacacagggctccacagatggtagaccttggaattagcattcttataggaggt
catcctggacttttctccaagcttgagtctgcttttgcacacttaaaacatctgaagaac
ctatcttggaaagctggaccattatacttaccagcaatatattcaatttgtgaaggtctt
acaacactgcagctctttgactctagcatactagctccagagctctcaaaagtagttagc
cagtgtaaaaatcttcaacaactatgggttatggacttaatcgaggacaatgggcttatt
gctgtggcatcatcttgcaaactcctccgaaaattgcgaatatttccttctgatccacct
tactgtcctctcacagaaattggccttattgctgtctcttctggttgtgtaatgctcgag
tctattctctatttttgccggaagatgactaattctgccctccttactattgctaataat
cgccccaatctcacatgcttccggctctgcatcatcaggccttacacccctgattatatt
actcaagagcctctggatgttggctttggcgctattgttgaatcctgcaaggacctccga
cgtctctccttatctggtcgtcttactgatcttgtgttcaaaactattggggcctcagca
aatcgtcttgagaggctctcagttggttttgctggtgattgtgatgcaggtcttcattac
attctatctggttgtaggaaattacgcattctggaaattaggaaatgcccgtttgggatc
aaggcattattggacaatgcagataagctggagacaatgcgatgcctttggatgtcatca
tgctccgtgacactgggggcatgcagattattagctaagaagatgccacggcttaacgtg
gaggttattgatgagaatggaggacggtcgttggatctgatgcccgatcatttccctgtc
caaaaactctacatttacagtactattgctggccccagatctgatgccccaccttttgtc
ttgactgtttaa
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