Zingiber officinale (ginger): 122047628
Help
Entry
122047628 CDS
T08725
Name
(RefSeq) uncharacterized protein LOC122047628 isoform X1
KO
K14485
transport inhibitor response 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
122047628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122047628
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
122047628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
F-box_5
LRR_At5g56370
Transp_inhibit
F-box-like
F-box
Motif
Other DBs
NCBI-GeneID:
122047628
NCBI-ProteinID:
XP_042464957
LinkDB
All DBs
Position
2B:144975609..145004994
Genome browser
AA seq
1138 aa
AA seq
DB search
MDLVRDVLYISSTSDSVLLKCFSESFSLILECPVTFSELPVCCQPLDGPGVLVGLTDKTR
WQPFVAWTIRLINKCMMEGTLHVEELINVSFAYSVCSSLLCYRDATLNMACFDFARITTE
VIDADIIPVENVIRSIACILCLDESKSVAFRNTIYDSCMGACLHLLHSSCSDKIIESTAN
EIISAFPRSICSTESRELQLAMCSAYTRIAKSCHPQIWEPRLLVRMLCSERPCLPLIQCI
RAAITILTPSYVLEGEVDTSTSVANLKSSVLPQISSKRSMEINSTVECKRQKTSDFLVDI
EEKKKFANELKRSICLFLESAKPASLKASTLKPETNITALSLLCLSFSAHPHSSLSSTIF
HQIFSWIPWICKQFAAQAKDSSLLVSALPTYLQAVHNILCLQDLESREKLFQDDEFLTDV
ERSSCIYPKYADLLELLKLPWTCNSIIQQACEKFWTWLFMMKMKKFVLKLSHQCQSLYYA
LVRYFLRKFSENLSEATDRPKKKQKASIIPVVEVEPPGCSFYPSFEACQDSFALVVASGM
QKIYKKELGPQPLLETIPGEAIANEDDGALSWTAAFPDEVWEHTFSFLPTNVDRHAVALV
CRSWYQIERLSRRKIFVGNCYAVAPVAAVRRFPEVRVATIKGKPSFVELLYTDWGGGAEM
WIQSMANGWPLLEELRLKRMVVSDDCLKLIARSFKNFRVLSLAFCEGFSAAGLAAIAANC
RNLEALDLHQYKVKKNCINWISHFPESFTSLVTLNIACLDGEMNVSTLERLVSRCPYLKT
LRLNHVTPLEKLVGLLHRAPQLVDLGIGILIGEGYPGFFSKLESAFAHLKHLKNLFWKAG
PLYLPAIYPICEGLTTLHLFESSIKAPELAKVVCQCKNLQQLWIRDLIEDDGLIAVASSC
KLLRKLQIVRSDLPYCPLTEIGLIAVSSGCVMLESVLYFCRQMTNSALLTIANNCPNLTC
FRLCITKPYTPDYITQEPLDAGFGAIVESCKDLRRLSISGLLTDRVFITIGASANRLEWL
SVCCAGDGDAGLHYILSGCRKLRMLEIRKCPFGIKALLDNADKLKTMRCLWMSSCSVTLG
ECRLLAKKIPRLNVEVIDETGGGPVHSRRDHFPVEKLYIYNTFTGPRLDAPPSVLTVW
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atggaccttgttcgagatgttttgtacatttcatcaacctcagatagcgttttgctgaag
tgtttcagcgagtcattttctttgatattagagtgccctgtgacgtttagtgagcttccg
gtttgttgccaacctctggatggcccgggtgtactggttggtctcactgataaaactaga
tggcaaccatttgttgcatggacaatcagactcattaacaagtgtatgatggaagggact
ctccatgtggaagagcttattaatgtttcttttgcttattcagtctgttcttctttactg
tgctatcgggatgcaactctgaatatggcttgttttgactttgcacgaataacaactgag
gtgatcgatgcagatataatacccgttgaaaatgttattcgttcaatagcatgcatactg
tgtcttgatgaaagtaagtctgtggcattcagaaacacaatatatgattcttgtatgggt
gcttgcctccatctactacattcttcttgttcggataagattattgaatccacagctaat
gagattattagtgctttccctagatccatatgtagcacagagagccgtgaacttcagttg
gctatgtgtagtgcctatacaagaattgctaaaagctgccatccgcaaatttgggaacct
agacttcttgttaggatgctatgttcagaaagaccttgtttacccttgattcaatgcatc
cgagcagcaatcactatactaactcccagttatgttctagaaggtgaagttgatactagc
acatctgttgctaatttaaagtcatctgtgttgccgcaaatcagtagcaaaaggtcaatg
gaaatcaactctactgttgagtgcaagcgtcaaaagacttcagattttcttgtggatatt
gaggagaagaaaaagtttgcaaatgaactgaagagatcaatttgtttgtttcttgaatct
gcaaaacctgcaagtttgaaagcctctacactaaaaccagaaacaaatataacagctctt
agcctcctctgcctttccttttcagctcacccacattccagtttatcctctaccattttc
catcaaattttttcttggattccttggatatgcaagcagtttgctgcacaggcaaaggat
tcaagcttactagtatctgctttgccaacctatttacaagctgttcacaacatattgtgt
cttcaagatctcgagtcacgagaaaagttgttccaagacgatgaattcttgactgatgtt
gaaagaagcagctgtatatacccaaaatatgcagatcttctagagttgttgaaattgcct
tggacttgtaattctattattcagcaagcttgtgaaaagttctggacttggctattcatg
atgaagatgaagaagtttgtattgaagctgtcacatcaatgccagtcattgtattatgct
ctggtcagatattttttgagaaaattctcagaaaacttgagtgaagcaactgacaggcct
aaaaagaaacagaaggcttccatcattccggttgttgaagtggagcccccgggctgttca
ttttatccttcatttgaggcttgtcaagattcatttgctctagttgttgctagtgggatg
cagaaaatttacaaaaaagaattgggtcctcagcctctactagaaacaattcccggtgaa
gcaattgcaaatgaagatgacggggccctctcttggacagccgccttccccgacgaggtg
tgggagcacactttctctttcctaccgaccaatgttgatcgccatgctgttgccctggtt
tgtcgctcatggtaccagatagaacggttgtcgaggcggaagatcttcgtggggaactgt
tatgcggtggcgccagtcgcggcggtgcggcgattcccggaggttagggtggcgaccatc
aaggggaagccaagtttcgtagagttattgtacaccgattggggtggtggggcagagatg
tggatccagtcaatggctaatggttggccgcttctcgaggagcttcggctcaagcgaatg
gtggtctctgatgattgtctcaagcttattgcccggtcctttaagaactttagggttctg
tctctagccttctgcgaagggtttagtgctgccgggctggccgccattgcggccaactgc
aggaatctggaggcacttgatctgcatcaatataaagtgaagaagaattgtataaactgg
atatctcattttccagaatcctttacttccctggttactctcaacattgcatgcctggat
ggtgagatgaatgtatctactcttgaacgcctcgttagcagatgtccctatctcaagact
ctcagactcaatcatgtcactcctctagaaaaacttgttggccttctacacagggctcca
cagctggtagaccttggaattggcattctcatcggagaaggttatcctggatttttctcc
aagcttgaatctgcttttgctcacttaaaacatttgaagaacctattttggaaagctgga
ccattatacttgccagcaatatatccaatttgtgaaggtcttacaacactgcatctcttt
gagtctagcataaaagcaccagagcttgcaaaagtagtttgccagtgtaaaaatcttcaa
cagctatggattagggacttaattgaggacgatgggcttattgctgtggcatcatcctgc
aaactcctccgaaaattgcaaatagttcgttctgatctaccttactgtcctctcacagaa
attggccttattgctgtctcttctggttgtgtaatgctcgagtctgttctctatttttgc
cggcagatgactaattctgccctccttactattgctaataattgccccaatctcacgtgc
ttccggctctgcatcaccaaaccttacacccccgattatattactcaagaacctctagat
gctggctttggggctattgttgaatcctgcaaagacctccgacgtctctccatatctggt
cttcttactgatcgtgtgttcataactattggggcctcagcaaatcgtcttgagtggctc
tcagtttgttgtgctggtgatggggatgcaggtcttcattacattctatctggttgtagg
aaattacgcatgctggaaattaggaaatgcccgtttgggatcaaggcattgttggataat
gcagataaactgaagacaatgcgatgcctttggatgtcgtcatgctctgtgacactgggg
gaatgcagattattagctaagaagattccacggcttaatgtggaggttattgatgagact
ggaggagggccggtgcattcacggcgtgatcattttcctgttgaaaaactctacatttac
aatacttttactggcccaagacttgatgcaccaccttctgtcttgactgtttggtga
DBGET
integrated database retrieval system
