Zingiber officinale (ginger): 122047822
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Entry
122047822 CDS
T08725
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122047822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122047822
03041 Spliceosome [BR:
zof03041
]
122047822
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122047822
Spliceosome [BR:
zof03041
]
Complex B
Other components
Prp19-related factors
122047822
Complex C
122047822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_8
TPR_2
TPR_12
PPR
ARM_TT21
ARM_TT21_C
TPR_CcmH_CycH
TPR_5
Motif
Other DBs
NCBI-GeneID:
122047822
NCBI-ProteinID:
XP_042465258
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All DBs
Position
1B:4992832..4997947
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AA seq
873 aa
AA seq
DB search
MSVATQTAISSPFRRRAVIYERALKALPGSYKLWHAYLRERLEAVRGRPVNDLAFDSLNN
TFERALVTMHKMPRIWLMYLASLSEQRLLTRARRTFDRALRSLPVTQHDRIWEPYLTLVS
LPGVPVETSLRVFRRYLLFDLSHIEDFINFLIASKRWQEAAERLAGVLNDNSFRSIKGKT
RHQLWLELCDLLTHHATEVSGLNVDAIIRSGIRRYTDEVGRLWTSLADYYVRRGLYEKAR
DIFEEGVQIVTTVRDFSVIFESYAQFEQSGLEAKMETAEEEKEDGEGEEDERKVDLSKLS
KKFLHSFWLNDDNDTDLRMERFENLLSRRPELLNSVLLRQNPHNVEQWHRRVKIFENDPA
KQVFTYTEAVRTIDPLKAVGKPHTLWVAFARLYESHNDLKNARDIFEKAVNVNYKAVNHL
ATVWCEYAEMELRHKEFRTAIELMRKATAEPSVEVKRRVAADGNEPVQMKLHKSLRLWSF
YVDLEESLGMLESTRIVYERILDLQIATPQIILNYAFFLEENKYFEDAFKVYERGVKIFK
YPHVKDIWVTYLSKFVKRYGKTKLERVRELFEHAIEQAPENEVKPIFLQYAKLEEEYGLA
KRAMKVYDQAVKTVPDSEKLSMYEIYIARAASIFGVPKTREIYQQAIESGLHDNDAKKMC
LKYAELEKNLGEIDRARAIYVFASQFADPRSDPDFWKKWKDFEIQHGNEDTFREMLRIGR
SVSASYSQTHVILPEYLMQKDQKMNLEEAVDTLKRAGVPEDEMAALERQLAPATNNLPSK
DGVRTVSFVSAGSESQSDGVRQVTANSEDIELPEESDSDDEKIEISQKDVPASVFGDLAN
KRALDADHKADAKDNTNSTHLGALERIKRQRQQ
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtggctactcaaacggcgatttcttctcccttccggcgccgggccgtcatttac
gaacgcgcgctcaaggccttacctggaagctacaaactgtggcatgcgtacctccgcgag
cgcctcgaagccgtccgcggccgccccgtcaacgacctggccttcgattctctcaacaac
acctttgagcgcgccctcgtgacgatgcacaagatgcctcgcatctggctcatgtatctc
gcctccctctccgagcagcgactcctcacccgcgctcgtcggaccttcgatcgtgccctc
cgctccctccctgtcacccagcacgatcgcatctgggagccctacctcactcttgtctcc
ctccccggtgttcccgtggagacctccctacgcgtcttccgccggtacctcttgttcgat
ctttcccacatcgaagatttcatcaattttcttatagcctcgaagcgctggcaggaagcc
gcagagcggcttgctggtgtacttaatgacaacagcttccgttccatcaagggtaagaca
cggcatcagctctggcttgagctttgcgatctcctcactcaccatgccactgaggtgtct
ggccttaatgttgacgccataatacgcagtggcatccggcggtacacggatgaggttggg
cgactatggacgtcccttgcggattactatgtccgcaggggattgtatgagaaggcgagg
gacatctttgaggagggcgttcagattgtgacaacagttagggatttcagtgtgatcttt
gaaagttacgcacagtttgaacagagtgggcttgaagcaaagatggagacagctgaggag
gagaaggaggatggggaaggggaggaagatgaaaggaaggttgatttatcaaagctgagc
aagaagttcctccatagcttttggttaaatgatgacaatgatacagatttaaggatggag
aggtttgagaatcttctctcccgtcggccagagctccttaacagtgtgctcttacgacaa
aatccacacaatgtggaacagtggcacaggcgagttaaaatttttgagaatgatccagca
aaacaggttttcacttacacagaggcagtgagaacaattgatccgttgaaggcagtgggg
aagcctcacacactttgggttgcctttgcccgattatatgagagccacaatgatctcaag
aatgctagggatatttttgagaaggctgtcaatgtcaattacaaggcagtgaaccatcta
gcaactgtctggtgtgaatatgctgaaatggagctgagacacaaggagttcagaacagcc
attgagctaatgcggaaggccactgcagagccctcagttgaagtcaagcgcagagttgct
gctgatggtaatgagcctgtacagatgaagctacacaaatcattgaggctgtggagcttt
tatgtggatttggaggagagccttgggatgttggagtcgactcgaatagtttatgagcgt
atacttgatctgcaaatagcaactccacaaattatcctaaattatgcattctttcttgag
gagaacaaatactttgaagatgcattcaaggtttatgagagaggtgtgaagatatttaaa
tacccacatgttaaagatatatgggtcacctacctctccaagtttgttaagagatatgga
aagacaaagttggagcgtgtaagagagttgtttgaacatgctattgagcaggcacctgaa
aatgaggtaaagccaatattccttcaatatgcaaaactggaggaagagtatggtcttgcg
aagcgtgcaatgaaggtctatgatcaagcagtgaagactgtccctgacagtgagaaattg
agcatgtatgagatttatatagctagagcagcttcaatattcggtgttccaaaaactagg
gagatataccagcaagccattgaatctggtctgcatgataatgacgccaagaaaatgtgc
ttgaagtatgctgaattggaaaagaaccttggagaaatagatcgtgcacgggccatctat
gtttttgcatcacagtttgcagatccacgttctgatccagatttctggaaaaaatggaaa
gattttgagattcagcatggtaatgaggacactttcagggaaatgcttcgtataggtcgt
agtgtttctgcgagctacagccagacacatgtcatcctgcctgagtacttgatgcaaaaa
gatcaaaaaatgaacttggaggaagctgtggacacactgaagcgtgcaggggtcccagag
gatgaaatggctgctctagaaaggcagttggctcctgcaaccaacaatttaccttctaag
gatggtgtccggacagtgagctttgtcagtgctggatctgaatcacagtcagatggtgtt
aggcaagtgactgcaaacagcgaagatattgagttgcctgaggagagtgattcagatgac
gagaaaattgaaatttctcagaaggatgttcctgcttctgtgtttggagatttggcaaac
aagcgtgccttggatgctgaccacaaagccgatgcgaaagataacacaaacagtacccat
cttggagcacttgagcgaatcaagaggcaacggcaacaatga
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