Zingiber officinale (ginger): 122048006
Help
Entry
122048006 CDS
T08725
Name
(RefSeq) splicing factor 3B subunit 3-like isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122048006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122048006
03041 Spliceosome [BR:
zof03041
]
122048006
03036 Chromosome and associated proteins [BR:
zof03036
]
122048006
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
122048006
Spliceosome [BR:
zof03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
122048006
Complex B
122048006
Complex C
U2 SnRNP specific factors
122048006
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
122048006
TFTC complex
122048006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
122048006
NCBI-ProteinID:
XP_042465522
LinkDB
All DBs
Position
2B:complement(154929021..154942385)
Genome browser
AA seq
1387 aa
AA seq
DB search
MAGMGEEGSPALASHSSSDSNSRRGVHYLAKCVLRGSAVLHAVQGHFRSPYSKDIVFGKE
TSLELASINEDGIIQSIFEQSVFGTIKDIAVLPLKDRHRGSPCQGQGKDILLVLSDSGKL
SLLTFCSEMHRFFAMTHIELSKPGNTRHQLGRMLAVDPGGCFVAVSAYEDQFAVINLAIS
SERNVVYEKIYYPPESKIDASNGRDTLGSIVRGTIWSMCFISHGTYQTKGYNPLMAIIMN
RKGSLMNDLLLFGCDPYSRIIQIISRYFESGPLALDISAIPHLPGFAILFRIGEMLLMDL
TDPQNVCCYHKISFDVPLLVEDKGYFDESCKILDVDDEGMFNVAACALLELKDSAADMYK
NDDPMSIDSSNGKFSSTTKLVCSWTWEPATSLDSKLLLCLDTGELFKVEISSGAGGVQIN
LSDCLYKGMACKALLWTSCGLIAGLVEMGDGFVLKLEHDRLSYKSSIQNIAPILDISLAN
YYDENQDQMFACCGMNPGGSLRTVRSGISVEKLLRTAPIYPGVTGMWTLRMKQSDSYHSF
LVLSFVEETRILSVGLSFSDVSEAVGFQPDVCTLACGLFADRMLVQIHRCGVKLCLPSSS
AHPEGIPLSQPFFSCWSPNNMTISVGAVGQNLVIVATSNPCFLYILGVRSISAFNFEIYE
IQHVRLQYEVSCISIPLRNANSKHLASEVTPNVKDHEASHIDKCDINTAFVIGTHKPSVE
LLSYGHQDVFRVIAVGAIEVSNALGSPISGCIPEDVRLVSVDHPYVLAGLRNGMLLRFEW
SAQTDPSRHSGFTRSCFNDFGSLSSSVDTLNSYYSAMEDTKAPAPIFLQLIAIRRIGITP
AVLVPMKESLDADIIVLSDRPWLLYTARHSLAYTSISFQPATHVSPVSSVDCPKGVLFVA
ENSLHLVEMIHCKRLNVQKFSIHGTPRKLLYHNESKTLLVLRTGLKGGPCSSDICRVDPL
SGTLLSKFQCEPGETAKCMQIVKVGNEQVLAVGTSQSSGRIIMPSGEAESTKGRLIVLSL
DFTYSSEGSPNHCSNLNLSSQSGSTFGEIIGHAGEELSLNSQCSSQGDICCDGIHLDETG
AGQLRLVSQALASGAVLSVCSYLDQFILASAGNTLNVFGFANENPQRLRKFATGRTRFAI
TCLKTFYNRIAVGDCRDGILFYSYHADVKKLELLYSDPAQRLVADCALMNRDTAIVSDRK
GNISVLSCPNTLEANEYPEKNLVLNCSFYMGETVMSIVKAPVPCKLPVDNFPNKSIGVEI
VQKSSYDSIVASTLLGSVFILIPITSEEYALLDAVQDRLAVHSLTSPVLGNNHREYRGRG
FPSGVPSILDGDMLMQFLELTSMQQESVLASSGGGSNSHALASESHRHPLYSNQVVHLLE
QIHYTLN
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcatgggagaggagggatcgcctgcgctggccagtcattccagttcggactcc
aactcccgccgcggcgtccactacctcgccaagtgtgtcttacgcggaagcgctgttcta
cacgctgtgcagggccacttccgttcgccttactccaaggacatcgtatttggcaaggaa
acatcactagaattggcatcaattaacgaagatggcatcatacaatcaatatttgaacaa
agtgtttttggtacaattaaagacattgcagtcctacccttgaaggacaggcaccgaggg
tctccatgtcaaggacaaggaaaagacatcttgcttgttctttctgattctggaaaactt
tcattgcttactttctgctcagagatgcataggttctttgcaatgacgcatattgaatta
tccaaacctggaaatacaaggcatcaactaggtagaatgttagctgtcgatcctggagga
tgttttgtcgctgttagtgcatatgaagatcaatttgcagtaataaatctagccatatct
tctgaaaggaatgttgtttatgagaaaatttattatcctccggaaagcaaaattgatgca
agcaatggacgggacactttgggctccattgtccggggtacaatatggagtatgtgcttc
atttcacatggtacttatcagacaaaaggatataatccccttatggcgattattatgaac
aggaaaggttcattaatgaatgacttgctattgtttggatgtgatccgtattcacggatt
attcaaatcatttctcggtattttgaaagtggccctttagcacttgatatatctgcgatc
cctcatctccctggctttgctattcttttcagaataggtgagatgcttttgatggatctt
acagaccctcaaaatgtctgttgctatcacaagataagctttgatgtgcctcttttggtt
gaagataaaggttattttgatgagtcttgtaagatattagatgttgatgatgaaggtatg
tttaatgttgctgcctgtgctttgctggagttaaaagattcagcagctgatatgtataaa
aacgatgatcctatgagcattgatagcagcaatggaaaattttcttcaactactaagctt
gtatgctcatggacttgggaacctgctacctccttggattctaagttgctattgtgttta
gacaccggggaactatttaaggttgaaatttcttctggtgctggtggagttcaaattaat
ttgtcagactgtctctacaagggcatggcttgtaaagcactcctatggacaagttgtgga
ttaattgcaggtctagtggagatgggagatgggtttgttcttaagctagaacatgataga
ttatcctacaaaagttctatccaaaatatcgctccaattttggatatatcacttgctaat
tattacgatgagaaccaagatcaaatgtttgcttgttgtggaatgaatcctggaggttca
ttaagaaccgttcgaagtggtatatctgtagaaaaacttttgaggactgcacctatttat
ccaggagtaactggtatgtggaccttgaggatgaaacaaagtgactcttatcactctttc
cttgttttgtcctttgttgaagaaactagaatattatcagttggtttaagcttcagtgat
gtaagtgaagcagttggctttcagcctgatgtatgtactttggcctgtggtttgtttgct
gatagaatgcttgtacaaattcataggtgtggtgtaaaactctgtttaccttcttcatct
gctcatcctgagggcatacctctttctcaaccatttttttcttgttggtctcccaataat
atgacaattagtgttggcgctgtaggtcaaaatttggtaatcgtagctacctctaatcct
tgctttctttacattcttggtgtccgatcaatatcagcatttaattttgaaatatatgag
attcagcatgtcagactgcagtatgaagtttcttgcatttctattccattgagaaatgcc
aattctaaacatttggcttcagaagttacaccaaatgtcaaggatcatgaagctagtcac
attgataaatgtgatattaatactgcttttgtcattggtacacataagccatcagttgaa
cttctatcatatggccatcaagatgtgttcagagtgattgctgtaggagctatagaagtg
agcaatgcacttggtagtcctattagtggatgtattccagaagatgttaggcttgtatca
gtggatcatccttatgttcttgctgggctgagaaatggaatgcttcttcgttttgagtgg
tctgctcagacagatccaagcaggcatagtggttttactaggtcttgttttaatgacttt
ggaagtctttcatcaagtgtggatactttaaattcttattatagtgcaatggaagatact
aaagctcccgcgcctatttttttgcaattgattgctattcgacgcataggaattactcct
gctgttttggtaccaatgaaagaatcacttgatgcagacataattgtactcagtgatagg
ccttggttattatatacagcaaggcacagccttgcatatacatctatctcatttcagcct
gctactcatgtgtctcctgtcagttctgttgactgtcctaagggggttctgtttgttgca
gaaaacagcttacatctggttgaaatgatacattgcaagagacttaatgtgcaaaagttt
tccattcatggcactccaaggaaacttttatatcataatgaaagtaagactttactagtg
ctgagaactggactaaagggtggaccatgttcatcagacatatgtcgtgtagatcccctt
agtggaacattgctttcaaaatttcagtgtgaacctggggaaacagcaaaatgcatgcaa
atagtgaaggtaggaaatgaacaagtcttggctgtgggaaccagtcaatcttctggcagg
attattatgcctagtggtgaagctgaaagtacaaagggccgactgattgtgttgagcttg
gatttcacatatagttccgaggggagcccaaaccactgctctaatttgaatctatcttcc
caaagtggctctacatttggggagataattggccatgctggtgaagaattgtcacttaat
agtcagtgcagcagccaaggtgatatttgttgtgatggtattcatcttgatgaaacaggg
gcagggcaattgcgattagtttcccaggccttagcatctggtgctgtactgtcagtctgc
tcttatctagaccagtttatcttggcttctgctggtaatactcttaatgtttttggcttt
gcaaatgagaaccctcagcggctgagaaagtttgctacgggcaggacacgttttgccatt
acttgtttgaagacattttataatagaatagcagttggtgattgccgtgatggtatcctt
ttttattcgtatcatgcggatgttaaaaaattagaactcttgtattctgatcctgctcag
agattggttgctgattgtgctctgatgaatcgtgatactgccatcgtatcagatcgtaaa
gggaacatttctgttttgtcatgtcccaatactttagaagccaatgaataccctgagaag
aacctggtgctgaattgttcattttatatgggtgaaactgtcatgagcattgtaaaggct
ccagttccatgtaaacttccagtagataattttcccaataaatctattggtgtggagata
gttcagaaatcttcctatgatagtattgttgcaagcacgttgctaggaagtgtcttcatc
ctcattcctattacaagtgaagaatatgcattgttagatgccgtccaagatcgacttgca
gttcattctctgacttctcctgttctaggaaacaaccacagggaataccgtgggcgtgga
tttccgtcgggagttcctagcatactcgacggagacatgctcatgcagttcttggagcta
acaagcatgcagcaagaatctgtactcgcttcatcaggaggtggatcaaactcccatgca
ttggcttcagagtcgcatcgccatcctctctactccaaccaggttgtacacctactcgaa
caaattcattacacactcaactga
DBGET
integrated database retrieval system
