Zingiber officinale (ginger): 122048143
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Entry
122048143 CDS
T08725
Name
(RefSeq) E3 ubiquitin-protein ligase SINAT3-like
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122048143
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122048143
Enzymes [BR:
zof01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122048143
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
122048143
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_TRAF
Sina_ZnF
Sina_RING
zf-C3HC4_2
DUF7567
Motif
Other DBs
NCBI-GeneID:
122048143
NCBI-ProteinID:
XP_042465680
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Position
1B:5796008..5799731
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AA seq
311 aa
AA seq
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MDSEIIECVSSIDAMDQEETSVQHHHSSKIHGVAAPLAPNTSVHELLECPVCTNSMYPPI
HQCQNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSHGCPEIFPY
YSKLKHEAQCNYRPYNCPYAGSECSVIGDIPFLITHLRDDHKVDMHTGCTFNHRYVKSNP
REVENATWMLTVFHCFGHYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNFSYSLEVGGI
GRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGSDRKELKLRVTGRIWKEQQNN
EAGVCMPNLFT
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atggattcggaaatcatagaatgcgtgtcgtcgatcgacgcgatggaccaagaggagacg
tccgttcaacaccaccactcctccaagatccacggcgtcgctgctcctctcgcccctaac
accagcgtccatgagctgctcgagtgccctgtctgcacaaactctatgtaccccccaatc
catcagtgtcaaaatgggcatacactgtgttcgacatgtaaaacaagggtgcacaaccgt
tgccctacttgtcgccaagagcttggagatatcaggtgcttggcactagaaaaggtggct
gagtcacttgagcttccatgcaagtactactcgcatggatgccctgaaatcttcccatac
tacagcaagctgaaacatgaagctcaatgcaactatagaccatacaattgcccatatgca
ggatctgaatgctctgttattggggatatcccttttttaattacacatttaagagacgat
cacaaagttgacatgcacacgggatgcacgttcaatcatcgatatgttaaatctaatccg
cgagaagttgaaaatgccacatggatgttgactgtgtttcactgtttcgggcattacttc
tgcttgcactttgaggccttccagctcgggatggctcctgtttatatggcgtttctgcgc
ttcatgggggacgaaaatgaagccagaaacttcagctacagccttgaggtcgggggcatt
ggaaggaaactgatatgggaaggaacacctcgaagcattcgcgacagtcaccgcaaggtc
cgtgacagtcacgacgggctcatcatacagagaaacatggcactcttcttctccggaagc
gataggaaagagctgaagctgagagtgaccggcaggatatggaaagagcagcagaacaat
gaggctggtgtttgcatgccgaatctctttacctga
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