Zingiber officinale (ginger): 122048818
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Entry
122048818 CDS
T08725
Name
(RefSeq) protein GLE1-like isoform X1
KO
K18723
nucleoporin GLE1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122048818
03015 mRNA surveillance pathway
122048818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122048818
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
122048818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GLE1
Motif
Other DBs
NCBI-GeneID:
122048818
NCBI-ProteinID:
XP_042466276
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Position
1B:complement(8030415..8048898)
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AA seq
628 aa
AA seq
DB search
MKWDPAKGSAINPTHSDYIQLEPPCSKSSLVVASVDPDQQWTMDDFVAGLQALELKLGFS
SSKIPSPLKQFERVLLQESEMHMLDKTRCESDQVVGWRMTCPDFDSSDFEGSVDDLSFET
TKSYAMDKQNLEKSIFLELERQSQLRLKEELRSKLADLVASQRSEINRSASAMTQISKYV
EVKQEMDRKLDKQYQRKIAEMLDSHLSAVQRDHEQRSLIEERRLRDDAAFEEAKKRGLIE
EKHRREKVKAEAEAKLKAAKLAEEAERTTMEAAQRAAKESAETETVSIREAAASEDARKK
STDDDNTNTKDTASLPKMPKEPLLTDGIKVLATDAALKAEIKRLKIYNEVIENPNLPSQK
ELDRRGRQISKILKQLTGTVENVRTKKDALVNILSTDIPGCPSSISAIMFAKQVIAWCED
STGTFDSTVFACGRVILLVTSKIPDVMDFLVAEFHKVCIYTVPKYLQPSDQASQNDDYWK
MIGYHEKDGKIESSESYLNRVQSYMKLYAAIIQTEIEGIRNPHGLGKGWSWLARFLNALP
ANKSTAYALEAFLKMAGFALYRKYKYQFKKMLDVISRSYLPAVRLKEKGDRKIVEVVKKL
EQYLEHEMFRKEPDGWRLHDGLLSKELV
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgaaatgggatcctgcgaagggttctgccatcaaccctacccactcggattacattcag
cttgagccaccatgcagcaagagctctcttgtggttgcttcagttgatcctgatcaacaa
tggacgatggatgattttgtagcagggctccaagcattagagctgaagcttggattttca
tcttctaagataccatcacctctaaagcagtttgaaagagtattactgcaagaaagtgaa
atgcacatgttggataagacgaggtgtgaaagtgaccaggtagttgggtggaggatgact
tgtcctgattttgattcaagtgactttgaaggatctgttgatgatttgtcatttgaaaca
actaaatcttatgccatggacaaacaaaaccttgaaaaaagcatctttttggagcttgaa
cggcagagtcagctaagacttaaggaggaacttaggtccaagttagcggacttggttgca
tctcagagaagtgaaatcaacagatcagcttctgccatgacccagatttcaaaatatgta
gaagtaaaacaggagatggatagaaagctcgacaaacaatatcaaagaaaaattgctgaa
atgcttgatagtcacttgtctgctgttcaaagggatcatgaacaaagatccctaattgaa
gaaaggagattaagggatgatgctgcttttgaagaagccaaaaaaaggggccttattgaa
gaaaaacatcgccgagaaaaagttaaagcagaagctgaggcaaaactgaaggctgcaaaa
ctggctgaagaagcagaaaggacaactatggaggctgctcaaagagcagccaaagaatct
gctgaaacagaaactgtcagtattagggaagctgctgcttctgaagatgcaagaaagaaa
tctacggacgatgataatacaaatacaaaggacacagcttcacttccaaaaatgccaaaa
gagccactgctgacagatgggatcaaggttttggcaactgatgctgcactgaaagcagag
atcaaaagactaaaaatttataatgaagtgattgagaaccccaatcttccttctcagaag
gaacttgatagacgtgggaggcagatctctaaaatcctaaagcaattaactggaactgta
gagaatgtcagaacaaaaaaagatgcacttgttaacattctctcgacggatattccaggc
tgtcccagctccatttctgcaattatgtttgcaaaacaggtgattgcatggtgcgaagac
tcaactggaacttttgacagcactgtttttgcatgtgggcgtgtcattcttttagttaca
tcaaagattccagatgtgatggattttctggtggctgagtttcataaagtttgcatctat
accgttccaaaatatttgcaaccatcagaccaagcatcacagaacgatgactactggaag
atgattggttaccatgaaaaagacggaaaaatcgaaagctccgagagttacctgaaccga
gtccaatcctatatgaagctttatgctgccataattcagacagagattgagggtatcaga
aatcctcatggcttaggaaaaggatggtcgtggcttgcgaggtttctgaatgccttgccc
gcaaacaaatccacggcttatgctttggaagctttcttgaagatggcaggctttgctttg
tacaggaaatacaaatatcaattcaagaagatgcttgatgttatttctcgaagctatttg
cctgcggtcagactcaaggaaaaaggagataggaagattgttgaagtcgtcaaaaaacta
gaacaatatttagaacatgaaatgtttcgaaaggaacctgatggatggcgtctccatgat
ggcttgttgtcaaaggagttggtgtaa
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