Zingiber officinale (ginger): 122048887
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Entry
122048887 CDS
T08725
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof00040
Pentose and glucuronate interconversions
zof01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122048887
Enzymes [BR:
zof01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
122048887
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
VWC2L_C
v110
Motif
Other DBs
NCBI-GeneID:
122048887
NCBI-ProteinID:
XP_042466340
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Position
1B:complement(8116909..8118547)
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AA seq
420 aa
AA seq
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MAAFVVLFLLALLSCNVLCSSSRTFPSKSIAAAAAAAAAAAVEDPELVVQEVQRSLNMSR
RELGYLSCKTGNPIDDCWRCDPGWAKNRQRLADCAIGFGKNAIGGRDGDIYVVTDSGDDD
PVNPKPGTLRYAVIQEEPLWIVFDHDMTIKLKEELLMNSYKTLDGRGANVHIAGGPCITV
QYVSNVIIHGLHIHDCKQGGNANVRDSPGHYGWRTLSDGDGVSIFAGAHVWVDHCTISSC
RDGLVDAIHGSTAITISNNYFSHHDKVMLLGHSDDLAADKSMQVTIAFNHFGEGLVQRMP
RCRHGYFHVVNNDYVHWEMYAIGGSAAPTINSQGNRFLAPNDQFAKEVTKREEAAESEWK
KWNWRSEGDLMLNGAFFTPSGAGASSSYAKASSLSARSSSVVDALTAAAGALTCKKGSRC
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atggcagcattcgtggtgctcttcctcctcgccttgttgtcctgcaacgttctctgctct
tcttctcgcacttttccttcgaaatcaattgcggcggcggcggcggcggcggcggcggcg
gctgtcgaagatcctgagttagtcgtacaagaggtgcaaaggagtttgaacatgtcgcgg
cgggaactggggtacttgtcgtgcaagaccgggaacccgatcgacgactgctggcggtgc
gatccggggtgggccaagaaccggcagcggctggcggactgcgcgattgggttcgggaag
aacgcgatcggcggccgcgatggtgacatttacgtggtgactgacagcggcgacgacgac
ccggtgaaccccaagccggggacgctgcggtacgcggtcatccaagaagagccgctctgg
atcgtcttcgaccacgacatgaccatcaagctcaaggaggagctgctgatgaactcttac
aagaccctcgacggccgcggcgccaacgtgcacatcgccggcgggccctgcatcacggtg
cagtacgttagcaacgtcatcatccacggcctccacatccacgactgcaagcaaggcggg
aacgcgaacgtgcgcgactctccggggcactacggatggcgcacgctgtcggacggcgac
ggcgtgtccatcttcgccggcgcccacgtgtgggtcgaccactgcacgatctccagctgc
cgcgacgggctggtggacgccatccacggatccaccgccatcaccatctccaacaactac
ttcagccaccacgacaaggtgatgctgctgggccacagcgacgacctcgccgccgacaag
agcatgcaggtcaccatcgccttcaaccacttcggcgaaggcctcgtgcagaggatgcca
aggtgtcgccatggctactttcacgtggtgaacaacgactacgttcattgggagatgtac
gcgatcggagggagcgcggcgccgacaataaacagccaaggcaacaggttcctcgcaccc
aacgatcagttcgccaaggaggtgaccaagcgggaggaggcggcggagagcgagtggaag
aagtggaattggaggtcggaaggagatctgatgctgaacggagccttcttcacgccatcg
ggggccggagcatcgtcgagctacgcgaaagcgtcgagcttgagcgcgcggtcgtcgtcg
gtggtcgacgcgttaacggcggctgccggcgcgctcacgtgcaagaaaggctcccgttgc
tga
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