Zingiber officinale (ginger): 122049334
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Entry
122049334 CDS
T08725
Name
(RefSeq) serine/arginine-rich splicing factor SR45-like
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122049334
03015 mRNA surveillance pathway
122049334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122049334
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122049334
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
PTS_EIIB
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
122049334
NCBI-ProteinID:
XP_042466664
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Position
1B:8744665..8753640
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AA seq
424 aa
AA seq
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MAKPGRARSRSSPSRSFSGSDSRSRSRSRSRSLSSSSSPSRSVSSRSRSPPPQKSGTTAV
RRGRSLTPPSKKTSPPPKKASPLPKKASPPPKKASPPRKASPVPESVVLHIDHLSRNVNE
AHLKEIFGNFGEIVNVELAMDRLVNLPRGYGYVEYKKRVDAEKALLYMDGGQIDGCITRV
RFTLTQRQKASSPIKVVPTAPKKEAPPKDKVGPPAEKDVPPQPRETSPRRKPPSPPRRRS
PPNRRVVSPRRRPDSSPRRRVESPVRRRVDSPANRRTETSPRRRPPSPPRRRSPSPPRRH
RSPVRISPRRGRGSPIRKRSPLPPRRRSPPRRARSPPRRSPPPPRHRSRSPMRRPLRSNS
RSISPRRGRAPPPRRGNSESSYSGSPSPRKGARRISRSRSPRRPVRGRSSSNSRSSSSPP
PRGK
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcctggcagagctcggtcccgatcctccccgtctcggtcgttctccggctct
gattcccgatctcgatctcgctctcgctccaggtcactctcttcgtcctcctcgccctca
cgaagtgtgagctctcggagtcggtcccctccgccgcagaagagtggaaccacagctgtt
agaagaggtcgttcgctgacaccgccatctaaaaaaacttcaccaccgcctaaaaaagct
tcaccgctgcccaaaaaagcttcaccaccgcccaaaaaagcttcaccaccaaggaaagca
tcaccagtacctgagtctgtcgttcttcacatcgatcacttatctaggaatgtcaatgaa
gctcatcttaaagagattttcggcaattttggtgagatagtcaatgtagaactggcaatg
gatcgactggttaatcttcctcgtgggtatggatatgttgagtacaagaagagagttgat
gctgagaaggctcttctttacatggatgggggtcaaattgatggatgtatcacccgggtg
agatttacacttacacaacgccagaaagcttcttcacctataaaggttgtgcctactgct
ccaaagaaggaagctccacctaaagataaagttggtccacctgcagaaaaagatgtgccc
ccacaacctagggaaacttctccaagaaggaaacctccctctccaccacggagacggtcc
cctccaaacagaagagttgtttcccctagacgtcgccctgattcctctccacgtcgtcgt
gtggaatctcctgttcgtagacgagtagattctcctgcaaatcggcgcactgaaacatca
cctcgacgaaggccaccttctcctcctagaagacgctctccgtcaccacctcggaggcat
agatcacctgttcggatctctcctagaagaggacgtgggagccctatccgtaaacgatct
cctcttccacctaggaggcgatcacctcctaggcgagcaaggagcccaccaaggaggtca
cctcctccgcctcgacatcgtagccgttcgccaatgaggagacctctacgttctaattct
agatcaatatctcctcgcaggggtcgtgctcctccaccaagacggggcaattcagaatcg
tcatactctggatctcctagtcctcgcaagggtgctcgaaggatatcaagaagtcgcagt
cctagaaggcctgttagaggaagaagcagcagcaacagcaggagcagcagctcccctccg
ccgagaggtaagtaa
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