Zingiber officinale (ginger): 122050434
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Entry
122050434 CDS
T08725
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof00040
Pentose and glucuronate interconversions
zof01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
122050434
Enzymes [BR:
zof01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
122050434
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
122050434
NCBI-ProteinID:
XP_042467268
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Position
3A:56654634..56656679
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AA seq
434 aa
AA seq
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MEFGIKCFFFYVLLASTAALSTAHIAFFDDYWQRKAEEARNETLSAYASDPTSVVNHFNS
AHLHENSTRRGLAHRAKKEAACSATNPIDRCWRCHSDWINYRKTLAECVKGFGHSTVGGV
RGKFYVVTDASDKDLVNPRPGTLRYGVTRDKPLWIVFARDMVIRLQQELMINSYKTIDGR
GANVHIAYGAGLTVQFVKHVIIHNLHIHDIKSASGGLIRDCETHWGFRTASDGDGVSVFG
SSHVWLDHLSMSNCADGLIDVIQGSTAVTISNCHLTRHNDVMLLGASDSYSDDSKMQVTV
AYNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSTHPTIISQGNRFVGPPNDAAK
EVTHREKAGEAEWSGWNWRSENDLYKNGAFFVESGHTVSGKFSKIEFIKAKPGNSAGRLT
RFSGFLNCYPGRPC
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggagtttggcatcaaatgcttcttcttctacgtcctcttggccagtactgctgccctg
tccaccgcgcacatcgctttctttgacgattattggcagaggaaagctgaggaggcacgc
aacgagacgctcagtgcctatgcttctgaccctacctccgtcgtcaatcacttcaactcc
gctcacttgcacgaaaatagcacgagaagggggctcgcccaccgtgccaagaaggaagcc
gcgtgctctgcgaccaaccctatagaccggtgctggaggtgtcatagtgactggataaac
taccgcaagacgttggcggagtgcgtcaaggggttcggccacagcaccgtcggcggcgtg
cgcggcaagttctacgtggtcaccgacgcctccgacaaagacctcgtcaacccccggccg
ggcaccctccggtacggcgtcacccgcgacaagcctctgtggatcgtcttcgcccgcgac
atggtcatccgcctccagcaggagctgatgatcaacagctacaagaccatcgacggacgc
ggcgccaacgtgcacatcgcctacggcgccggcctcaccgtgcagttcgtgaagcacgtc
atcatccacaacctccacatccacgacatcaagtccgcctccggcggcctcatccgcgac
tgcgagacccactggggcttccgcacggccagcgacggcgacggcgtcagcgtcttcggc
tcctcccacgtctggctcgaccacctctccatgtccaactgcgccgatggcctcatcgac
gtcatccaaggctccaccgccgtcaccatctccaactgccatctcacccgccacaacgac
gtgatgttattaggcgccagcgactcgtactccgacgactcgaagatgcaggtcaccgtg
gcttacaaccacttcggtagagggctggtgcagaggatgccaaggtgccgatggggcttc
ttccacgtagtgaacaacgactacacccactggctgatgtacgccattggcggcagcacg
caccctaccatcatcagccaaggcaatcgatttgttgggcccccaaacgatgcagccaaa
gaggtgactcacagggagaaggcaggggaggcggagtggagtggctggaactggaggtcg
gagaacgatctatacaagaacggagcattcttcgttgagtcgggacacacggtgtccggc
aagttctccaagatcgaattcatcaaggcgaagccagggaattcggcggggcggctgact
cgcttctcggggttcctcaattgctacccgggacgcccatgctga
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