Zingiber officinale (ginger): 122050850
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Entry
122050850 CDS
T08725
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122050850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122050850
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122050850
mRNA degradation factors
5'-3' decay
Decapping complex
122050850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
RED_N
Motif
Other DBs
NCBI-GeneID:
122050850
NCBI-ProteinID:
XP_042467657
LinkDB
All DBs
Position
3A:161609139..161616537
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AA seq
797 aa
AA seq
DB search
MASPGGGPNTSAIYDTQALLKPPSPSPGAIPRQPFPPTSAYPSPLPPSTFPTPTHPGAFS
YPMATPPFHHHPFLHYPQESLHRLPVIYPPVHPHLPNPNPSTNPSTTSNTNPGARLMALL
NPPASPQLEPAVSMPPPSSTPSDFLMPSTVGVLHPMPSAPHAALAQPAPTRLPSNKLPRG
RLLSTGAHAVYDVDSRLPGENQPPQLEVTPITKYISDPGLVLGRQIAVSRTYICYGLKLG
AVRVLNINTALRSLLKGHSQVSIIVTSFEEESHSGDDIAMVESKRTLLATAEEDGRDSTI
NATEDITEPSVVTVSQSLSVVKGKKQKGKQHQTSSPSSPSSTLLHSTYSLNESALSENAP
LVDPASTDILAMQEMLSQVVNMQKELQKQMSVIVAAPVAKEGKRMETSLSRNIEKMIKAN
GDALWARVQEENAKYEKFDKERMQQITNLIANNVNKDLPTILERAVKKELSAIGSTVARS
VAPAISSAIAESFQRGVGDKAVTQLEKSVSSKLEATVARQIQVQFQNSGKQILQDSLRSC
LESSVVPAFEQSCKAMFEQVDNAFQKGMNEHAAAAHQQLEAANTPLAVTLREAISSASSI
TQSLTTELIDGQRKILALIAAGNTKVLNPLVSQQANGPTASPPEMQASLSLLQVGAHLDP
TKELSRLISERKYEEAFTLALQRSDVSIVSWLCAQVDLHAICSTVPLPLSQGVLLALLQQ
MACDIGNETSRKVGWMTDVAVVINPADQMIALHVRPIFEQVYSLSGRQRALPTTTAPESA
IIRLLMHVINSVLTSCK
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcccccggcgggggccccaacacctctgcaatctacgacacgcaggccctgctc
aagccccccagccctagtcccggtgccattccccggcagccattccctcctacctctgcg
tacccgtctccgctaccgccgtcgacatttccgactccaacgcatccaggcgctttctca
taccccatggctactccgcctttccaccaccatcctttcctccattacccccaggagtcc
ctccaccgcctcccagtcatctacccgcctgtgcatccccaccttccgaaccccaatccc
agcactaaccccagtactacctccaatacaaatcccggtgctcgccttatggccctcctg
aaccctcctgcaagcccccaacttgaacccgccgtctcgatgccgcctccctcttctact
ccttcggatttcctgatgccttccacggttggcgtgcttcatcctatgccgtcagcacca
catgcggcactggcccagccagcgccaacgaggttgccgagcaacaaattgcctaggggt
cggcttctcagcacaggggcacatgctgtctatgatgtggattcacgtctgccgggagag
aaccaaccgcctcagctcgaggtgacgccgatcaccaagtatatatctgacccagggctt
gttttgggccggcaaattgccgtcagcaggacctacatatgctatgggcttaagcttggt
gctgttcgggtgctaaatatcaacacagctctgagatctttgctaaaggggcattctcag
gtttctataatagtaacttcctttgaagaagaaagtcactcaggtgatgacattgctatg
gttgagtcaaagagaaccttattagctaccgctgaggaagatggacgagatagcacaata
aatgcaacagaagatataactgaaccttctgttgttactgtatctcaatctctctcggtt
gtcaaaggaaagaaacaaaaaggaaaacaacatcaaacatccagtccttcatcaccttcc
tctacccttctgcactccacctattctttgaatgaatcagcactcagtgagaatgcccct
ttagttgatcctgcttccacagatattcttgcaatgcaggaaatgctgagccaggtagtg
aatatgcagaaggaactgcaaaagcagatgagtgtaattgtggctgctcctgtagcgaag
gaaggaaaacgaatggagacttccttgagccgaaatatagagaagatgatcaaagctaat
ggagatgctttatgggcccgtgttcaagaagaaaatgcaaaatatgagaagtttgacaag
gaacgtatgcaacaaatcaccaatctaattgctaacaatgtgaataaggacttgccaacc
attttagagagggcagtgaagaaagaactttctgcaataggatccactgtggctcgttca
gttgcacctgctatttcttcagctatagcagagtcatttcagaggggagttggcgataaa
gcagtaactcagttggagaagtcagtcagttctaaacttgaagctactgttgcaagacaa
atccaagtgcagtttcaaaactctgggaagcagattcttcaggattctcttagatcctgt
ttggaatcatctgtggttcctgcatttgagcaatcttgtaaagcaatgtttgagcaagtt
gacaatgcattccagaaaggaatgaatgaacacgctgctgctgctcatcaacaacttgag
gcagcaaatacacctttagcagttactttaagggaagcaatcagctctgcatcttcaatc
acccaaagtctcactactgagttaattgatggccaacgaaaaattttggctcttatagca
gcaggaaacacaaaggttctaaaccctctggtttcccaacaagctaacggccctacagct
agccctcctgagatgcaggcctccctgtctctcctgcaggttggggcacatctagatccg
acaaaagaactctcgagattaatttctgagcgtaaatatgaggaagcattcacactggcg
cttcaaagaagcgatgtgtcgatagtgtcttggctatgtgcacaggtggatttgcatgct
atttgttccacagtgccacttcccctaagtcaaggtgttcttctggcacttctgcagcaa
atggcctgtgatatcggcaatgagacatccagaaaagttggctggatgactgatgttgct
gtagtaatcaacccggctgaccaaatgattgcgttacacgtccgacctatctttgagcaa
gtgtacagtttgtcgggtcgccaaagagcccttccaacgactactgcccctgagtcagcc
atcatccgcctattgatgcatgttataaattctgtactcacatcctgcaagtga
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