KEGG   Zingiber officinale (ginger): 122051009
Entry
122051009         CDS       T08725                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122051009
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:zof03041]
    122051009
Spliceosome [BR:zof03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    122051009
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_WDR3_1st WD40_Gbeta Beta-prop_WDR3_2nd WD40_CDC20-Fz WD40_WDHD1_1st EIF3I Beta-prop_EML_2 WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_IFT122_1st Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_Aladin PRP4 Beta-prop_Vps41 WD40_RFWD3 Beta-prop_EIPR1 Beta-prop_SCAP Beta-prop_WDR41 Beta-prop_DCAF4 Beta-prop_WDR19_1st Beta-prop_RIG_2nd WD_LRWD1 Beta-prop_IFT140_1st Beta-prop_Nup120_160 PROPPIN MIOS_WD40 Beta-prop_ACSF4 Tricorn_2nd WD40_like Beta-prop_NWD2_C Beta-prop_VPS8
Other DBs
NCBI-GeneID: 122051009
NCBI-ProteinID: XP_042467846
LinkDB
Position
1B:complement(12210762..12215673)
AA seq 539 aa
MEEDSSRTLTPILPSLPPDHVAPLHAPTVVAIAALPPPPAIAPIPVPRATRAPSVGSDSD
REGSLSRPSADDYEVSEESRLARERQEKLVQELLMKRRAYAMAVPTNDAAVRARLRRLGE
PITLFGEREMERRDRLRSIMVRLDLEGQLDRLLKVHEDEQAAAAAAGAPAEEEGPQQYPF
YTEGPNELLEARVDIAKFSVARAKARIARARRRRDDPDEDEEVEAEYAVDQAGGFVLECS
EIGDDRPLSGCSFSHDCTMLATSSFSGVAKIWSMPQVTKVSTLKGHTERLTDVTFSPTED
NLVATASADKTAKLWKSDGSLLKSFNGHLDRLGRVAFHPSGKYIGTASFDKTWRLWDVNT
GTELLLQEGHSRSVYGVCFHPDGSLAASCGLDALARVWDLRTGRSILAFEGHVKSVLGLS
FSPNGYRLATGSEDNTCRIWDLRKRKCVYTIPAHSHLISQVKFEQQDGYFLATASYDTKA
MVWSAQDFKPIKTLSGHEAKVTSLDITSDGQQIATVSHDRTIKIWSSRSNEKKNDMDMD
NT seq 1620 nt   +upstreamnt  +downstreamnt
atggaagaggattcgtcccgaaccctaaccccaatccttccttccctaccgccggaccat
gtcgccccgctgcacgccccaaccgtcgtcgccatcgctgccctacccccgccgcctgcc
atcgcgcccatccctgtcccacgcgccacccgggccccgtctgtcggatccgactccgac
cgtgagggctcgctctcccggccctcggccgacgactacgaggtctctgaggagagccgc
ctcgccagggagcggcaggaaaagctcgtccaggagctcctcatgaaacgccgcgcttat
gccatggccgtccccaccaatgacgccgctgtccgcgcccgtctccgccgactcggggag
cccatcactctcttcggtgagcgcgagatggagcgccgggatcgactccgttccatcatg
gtccggctcgacttggagggccaactcgatcgcctcctgaaggtccacgaagatgagcag
gctgcggcagcggctgccggtgcccctgctgaggaagagggtccacagcagtaccccttt
tacacggagggaccgaatgagcttcttgaagccagggtagatattgccaagttctcagtc
gccagggcgaaggcaagaatcgcgagggcgaggaggaggagggacgaccctgacgaggac
gaagaggttgaggctgagtatgcagtggatcaagcaggtggcttcgtccttgaatgtagt
gagattggggatgaccgtccgctctctgggtgttccttctctcatgattgcacgatgctc
gccacaagctcatttagtggagttgccaaaatatggagtatgcctcaagtaacaaaggtt
tcaactttaaagggtcacactgagcgtttaactgacgtgacattctctcccacggaagat
aatctggtagcaactgcatccgctgataagactgcaaaactatggaagagtgatgggtct
cttttaaagtcatttaatggacacctagatcgtcttggacgtgttgcattccatccatca
ggtaagtacataggtactgctagttttgacaagacatggagactctgggatgtcaatact
gggacagaattactacttcaagagggtcatagtcgaagtgtgtatggggtttgtttccat
cctgatggatctttagcagcatcttgtggccttgatgcacttgctcgtgtatgggatctt
cgtactgggagaagcattcttgcatttgaaggccatgttaagtcagtccttggacttagc
ttttctccaaatggttatcgcttagccactggtagtgaggataacacttgccgcatatgg
gacctgagaaaaagaaagtgtgtatatactataccagctcattcgcatcttatttcacaa
gtaaaatttgaacaacaggatgggtactttctggctactgcttcatatgataccaaagca
atggtttggtcagctcaagatttcaagcctattaaaactttatctggtcatgaagccaag
gttacgagtttggatatcaccagtgatgggcaacagatagcaactgtatcgcatgatcgc
actatcaaaatttggtccagcagaagcaacgaaaagaagaatgatatggacatggattga

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