Zingiber officinale (ginger): 122051125
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Entry
122051125 CDS
T08725
Name
(RefSeq) serine/arginine-rich splicing factor SR45a-like
KO
K12897
transformer-2 protein
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122051125
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
zof01009
]
122051125
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122051125
Protein phosphatases and associated proteins [BR:
zof01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122051125
Spliceosome [BR:
zof03041
]
Common components
Common spliceosomal components
SR proteins
122051125
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_5
RRM_DEAH11
Motif
Other DBs
NCBI-GeneID:
122051125
NCBI-ProteinID:
XP_042468017
LinkDB
All DBs
Position
3A:7316602..7323712
Genome browser
AA seq
234 aa
AA seq
DB search
MADSSRGKYSHSLSPYRGHSKSRSPPRGLSHSRSRSPLRGRARSRSRSRDREAANFGNTL
YVTGLSSRVTERDLEHHFSKEGKIVGCHLVVEPRTRASRGFAFVTMDNVKDADRCIKYLN
QSILEGRYITVEKSRRGRARTPTPGKYLGVASTRDGRRGERDRYFGGYSRDDYGGGYQRS
PRHSPYRGGHEYSPQRSPYYDSRYRRGRSRSFSPYGYGSPPRASYGRRVNGYPR
NT seq
705 nt
NT seq
+upstream
nt +downstream
nt
atggcggattcttcacgggggaagtactctcattcactgtctccatatcgtggtcattcc
aaatcaagatctcctcctaggggtttgtctcactcaaggtctcggtctccacttaggggt
cgggcaagatctcgatctagaagtcgggacagggaggcagcaaattttggaaatactctt
tatgtaactggcctttcatccagggttacagaaagggacttggaacatcacttctccaag
gaaggaaagattgtgggatgtcacctggttgttgaaccgcgtacacgtgcttctcgtggc
tttgcatttgtgactatggacaatgtaaaagatgctgaccgttgtatcaaatacctcaac
caatcaatcctggaaggacgttatataacagtcgagaagtcgaggagggggcgagcacgg
acaccaacacctggaaaataccttggtgtggccagcacaagagatggtcgccgaggtgag
cgagatagatattttgggggctacagccgtgatgactatggtggtggttaccagagatct
cctaggcactctccttatcgtggtggccatgaatactcgcctcagagatcaccttattat
gatagcaggtacagaagaggacgatcgaggtcattttctccttatggttatggcagccca
cccagagcatcctatgggcgtcgtgtgaatggctatcctcgatag
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integrated database retrieval system
