Zingiber officinale (ginger): 122051192
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Entry
122051192 CDS
T08725
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122051192
09123 Folding, sorting and degradation
03018 RNA degradation
122051192
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122051192
03041 Spliceosome [BR:
zof03041
]
122051192
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122051192
mRNA cycle factors
Stress granule specific factors
122051192
Spliceosome [BR:
zof03041
]
Complex C
Other components
Complex C specific factors
122051192
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_7
PABC_AtC3H46
HPS3_C
Motif
Other DBs
NCBI-GeneID:
122051192
NCBI-ProteinID:
XP_042468114
LinkDB
All DBs
Position
3A:16928477..16936702
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AA seq
646 aa
AA seq
DB search
MAIQHQAVVSSAEAAMGGGAGQFPSTSLYVGDLESGVSDAQLYDVFSQIGQVVSVRVCRD
ISSRRSLGYAYVNFSDPADAAKAIEILNFTPLNGKAIRLMYSNRDPNMRRSGAANIFIKN
LDKTIDNKALYDTFSVFGSILSCKVALDASGLSKGYGFVHFEQEEAAQNAIEKLNGMLMN
DKKVFVGPFVRKQEREGAAATVKFNNVFVKNLSESVTDETLQEVFGEFGKITSCIVMREG
DGRSKCFGFVNFENPDDAAMAVQELNGKKFDDKEWYVGKAQKKSEREQELKERFEQSKQE
DSEKFQGVNLYLKNLDDSIGDGSLRELFSGFGTITSCKVMLDKNGVSKGSGFVAFQSSED
ALRAVSEMNGKMVGSKPLYVALAQRKEDRRARLQAQFSQTRPVAMQASVAPRVPLYPPGA
PGLGQPLFYGQPPPALVPQPGFGFQQPLVPGMRPGGAPFPNFFMPMVQPGQQVQRPGGRR
GASGAAHQNQQHPMPMIQQQMLSRGGRPYRYPVGRNVQDASGMAGGLFPYDMGGMPIRDA
AVSHPIPIGELASALTNATPEHQRTLLGESLYPLVEQLEPEYAAKVTGMLLEMDQTEVLH
LLESPEALNAKVAEALEVLRSVAQHQQQAVSPVDRLAALSLNDVVS
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atggcgattcagcaccaggcggttgtatccagcgcggaggccgcaatgggtggtggcgcg
ggccagttcccttcgacgtcgctgtacgtcggggacttggagtcgggtgtttcggatgcg
cagctgtatgatgtctttagtcaaatcggacaggttgtgtcggtccgtgtgtgtcgcgac
atcagctcacgtcgctcacttggttacgcctacgtgaacttcagcgatcctgccgatgcg
gcaaaggcaattgaaattcttaattttacacctctcaatggaaaggctattcgccttatg
tattcaaatcgtgaccctaatatgcgcagaagtggtgctgccaacatatttattaagaat
ctggacaaaactatagacaacaaagctctgtatgatacattttctgtctttggtagcatt
ctgtcctgcaaggttgccctagatgcatctggcctttcaaaaggctatggatttgttcat
tttgaacaagaggaggcagcacaaaatgctattgaaaagttaaatggcatgctcatgaat
gataagaaagtatttgttgggccatttgttcgtaaacaggagagggagggtgctgcagcc
actgttaagttcaataatgtatttgtaaaaaatctttcagaatctgtaacagatgaaaca
ctacaagaagtttttggtgaatttggaaagatcactagttgtattgtgatgagggaggga
gatggaagatccaagtgctttggctttgtcaattttgagaaccctgatgatgcagcgatg
gctgttcaggaacttaatgggaaaaaatttgatgataaggaatggtatgttggaaaagca
caaaagaagtctgaaagagagcaggaacttaaagagagatttgagcaaagtaagcaggag
gatagtgaaaaattccaaggggttaacttatacttgaagaacttggatgatagcatcggg
gatggtagcttaagagaacttttctctggatttgggacaattacttcttgcaaggttatg
cttgataaaaatggtgtgagcaagggatctggatttgttgctttccagtcttctgaagat
gcattacgggctgtgtcggagatgaatggcaaaatggttggtagcaaaccactttatgtt
gcacttgcacaacgcaaggaagataggagagccagattgcaggctcagttttcgcaaact
cgccctgtggcaatgcaggcttcagttgctccacgtgttccattatatcctcctggtgca
cctggattggggcagccacttttctatggtcaaccacctcctgcacttgttcctcagcct
ggattcggcttccaacagccacttgttcctgggatgaggcctggtggtgcaccgtttccc
aatttctttatgccaatggtccaaccgggtcagcaagttcaacgtccaggtggaagacgt
ggagcatcaggtgctgcccatcagaatcagcagcaccccatgcccatgattcagcaacag
atgctgtcaaggggtggacggccctatcggtatccagttgggcgtaatgtgcaagatgct
tctggcatggctggaggattgttcccatatgacatgggtggtatgcctataagggatgct
gccgtatcacaccctattcctataggtgaactggcttcagctcttacaaatgctacacca
gagcatcagagaacgttgctgggcgaaagtttgtacccacttgtggagcagctggagcct
gagtatgctgccaaagttacgggcatgctcttggagatggaccaaactgaagttcttcat
ttgctggaatcacctgaggctctaaatgcaaaggtagcagaggccctggaagtcttgcga
agcgtcgcacagcatcagcagcaggctgtctcgccggttgaccgcttggctgccttgtca
ctgaatgatgtcgtttcctga
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