Zingiber officinale (ginger): 122051286
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Entry
122051286 CDS
T08725
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122051286
03036 Chromosome and associated proteins [BR:
zof03036
]
122051286
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
122051286
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122051286
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
122051286
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
UvrD-helicase
SLFN-g3_helicase
UvrD_C
AAA_22
AAA_16
ATPase_2
PhoH
DEAD
Helicase_RecD
AAA_7
nSTAND3
MOV-10_Ig-like
AAA_5
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
122051286
NCBI-ProteinID:
XP_042468264
LinkDB
All DBs
Position
3A:20102982..20107268
Genome browser
AA seq
923 aa
AA seq
DB search
MSTFGENDCEDQYSEIGEKPDIGFMDFEDDKSFHNFDPLEGPVVITAPFPLVHGKPQSVL
IGETSAASIDIRNTTSDPVVLWSIRIFSSNPEDSFVLSMMKPPSDNATEEERQNFVGDYN
LEDRVLQPGQTLKVWLSCKPKEIGLHSSVIHFDLQDEKIERVAFLIADDNISRDLFSNKP
YKANSRRKMFEHTQYVAGPRPSRPNSQMHRYILPQFNIPRDLREMIENKQVPDVIIEGLN
DGNYAKFFSALLVMEEINLEQEMRGYDMVGATMKRKGNYFLCLEVPGLAEKRPSLVSGDH
VLAQRATDDAHDRQSYEGFIHRVEADEIYLRFDKVFHHCHQEGGIYNVSFTYNRVCMRRL
YQAAHAAESLGAELLFPAQTPQRRAIKRSFQPINPNLNREQVCAVEMILGCKGFPPYVIY
GPPGTGKTVTLVETILQLYKTQKRARIVVCASSNSAADHILEKLLDRDGTGVRTNELFRL
NATSRAYEDVKPDFLRFCFFDEMVFKCPPLRALLKYKIIISTYMSASLLYTEGIRRGHFS
HIILDEAGQASEPETMIPISNLCIKDTVIVLAGDPKQLGPVIYSRQAENYGLGKSFLDRL
FEHKYYGGTDENYVIKLVRNYRCHPAILDLPSRLFYNGELIASREDTISTMYDYMDLPNK
SFPVLFIGIQGCDEREGSNPSWFNRIEASKVVEIIRKLRRNTDLCEDDIGVITPYRQQVL
KLKKALQSLEMPELQVGSVEQFQGQEREAIIISTVRSTIKHNEFDRVHQLGFLSNPRRFN
VAITRAKSLLIIVGNPHIITKDCNWDKILRHCADNGSYQGCPLPPPEGNDHINGASSEHD
SKCEDSQNDHINDASSEHDSKYEDSQPYNDNDVKLAEDETVQQEVGWSDLPSSNNYGSNW
NDDLPKPNVVTWGDFVIEPTGWD
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatttggcgagaatgattgcgaagatcagtactctgaaattggagaaaagcct
gacataggttttatggattttgaagatgacaagtcctttcacaattttgatccattggaa
ggtcctgttgttattactgcccctttccccttagtccatgggaaacctcagtctgtcctg
attggagaaacatcggcagcatcaattgatatcagaaacaccaccagtgatccggtagtg
ctctggagcatccggatcttctcgtctaatccagaggacagttttgttctatcaatgatg
aagcctccatctgacaatgctacagaggaagaaaggcaaaactttgtgggtgattataat
ttggaagatagggtgcttcagccagggcaaaccctcaaagtttggctttcatgcaagcca
aaagagattgggctacatagttctgttattcatttcgatctgcaagatgagaaaatcgaa
cgtgttgcctttctgattgcagatgataacatttcacgggatttattttccaacaagcct
tacaaagcaaattctaggaggaaaatgtttgaacatacacagtatgtagcaggacctcgc
ccatctcggccaaacagtcagatgcacagatacattcttcctcaatttaatattccccgg
gatctacgcgaaatgattgaaaataaacaggttcctgatgtcattatagaaggcttaaat
gatggaaactatgcaaaattttttagcgccctactagtcatggaggaaattaatcttgag
caagagatgcgggggtacgacatggtgggtgcaactatgaaaagaaagggaaactacttt
ttgtgtctagaggtacctggattggccgagaaaaggccgtcgctggtttctggggaccat
gtgcttgcacagcgagcaacagatgatgcacatgatagacaatcttatgagggtttcatt
cacagagtggaggcagatgaaatatacctgagattcgataaggtttttcaccactgccac
caagaaggtggcatttataatgtcagcttcacatacaatagagtgtgcatgagaaggttg
taccaagcagcccacgcggcagaaagcttaggtgcagagcttctctttccagcgcagaca
cctcagagaagagctatcaaaagatcttttcaaccaataaatccaaatctgaacagggag
caggtctgtgcggttgaaatgatacttggctgcaaaggttttcctccttatgtaatttat
ggacctccaggaactggcaagactgttacacttgttgaaactatattgcagctctacaaa
acccagaaaagagctaggatcgttgtgtgtgcttcatctaatagtgctgccgaccatatt
cttgaaaaactcttggatagagacggaactggtgttcggacaaatgagttgtttcgattg
aacgcaaccagccgagcatatgaggatgttaagcctgattttcttcgcttttgcttcttt
gacgagatggttttcaaatgcccccctctgagagccttactaaagtacaagatcatcata
tcaacctacatgagtgcatcgctactatatactgaaggcattcgtagagggcatttctcc
cacatcatattggatgaagcaggtcaagcatctgaacctgaaaccatgattccgatctca
aacttgtgtatcaaggacactgtcatcgtgcttgctggagatcctaagcaattgggacct
gtcatttattcaagacaagctgagaattatggtttgggaaaatcattcttggataggctt
ttcgagcacaagtattatggaggcactgatgagaactatgtcataaaactagttagaaac
tatcgttgtcatccggctatcttggatcttccttcaaggcttttctacaatggcgagttg
attgcttctagagaggatacaatctcaacaatgtatgactatatggaccttccgaacaag
tccttccctgtccttttcattggaattcaaggatgtgatgaaagggagggtagtaatcca
tcatggtttaatagaattgaagccagtaaagtggttgagatcatcagaaaattgaggagg
aatactgatctgtgtgaggatgatattggagtaatcactccataccgccaacaagttctc
aagttaaagaaagcactccagtctctggagatgccagaactgcaagttggtagcgtggag
caatttcaagggcaagagagggaggctataattatatctacagtgaggtccactatcaag
cataatgagtttgatcgtgtgcaccaattgggattccttagcaaccctagaaggtttaac
gttgccattactcgtgctaaatctctgctcatcattgtaggcaatcctcacatcattacg
aaggattgtaattgggacaagattctcaggcactgtgcagataatggttcatatcaaggt
tgtcctctcccaccaccagaggggaatgaccatatcaatggtgcatcatcagaacatgat
tccaaatgcgaagattcgcagaatgaccatatcaatgatgcgtcatctgaacatgattcc
aaatatgaagattcgcaaccttacaacgacaacgatgtgaaattggcggaggatgaaaca
gttcaacaagaagttggatggagtgatttgcctagctcgaacaactacggctccaactgg
aatgacgacctcccaaaacctaatgtcgttacgtggggtgattttgtcatagaaccaact
gggtgggattaa
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