Zingiber officinale (ginger): 122051377
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Entry
122051377 CDS
T08725
Name
(RefSeq) paired amphipathic helix protein Sin3-like 4 isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
zof03036
]
122051377
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
122051377
REST complex
122051377
Heterochromatin formation proteins
Other heterochromatin formation proteins
122051377
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAH
Sin3a_C
Sin3_corepress
HHD_RTEL1
PAH_ZNF598
AF_1575
Motif
Other DBs
NCBI-GeneID:
122051377
NCBI-ProteinID:
XP_042468423
LinkDB
All DBs
Position
3A:21395031..21407652
Genome browser
AA seq
1433 aa
AA seq
DB search
MKGLREEACMGSQLKRPTVSRADPSGQTHMAPAPAAVGTTPKLTTNDALAYLKAVKDIFQ
DKREKYDEFLEVMKDFKSQRIDTNGVIARVKELFKGHRDLILGFNTFLPKGYEIKLPEEK
KPIEFEEAIDFVNKIKNRFENDEHVYKSFLDILNMYRRENKSIHEVYEEVAALFQNHHDL
LEEFTHFLPDTSATYAPLHHGHAGRAFPRRDDRSSMMPAVRHFHVDKRDRAHLAHADRNF
SVDRPDTEHDRKRRHPNRDKDRKDDSDRKDHERDEDLELDSGDLDNAQHRRKLSPRRADD
STAEPMQQGADGPGIYSISSSTFDDKNALKSVYTREFNFCEKVKEKLHPETYQEFLKCLH
IYSQEIVTRTELKNLVSDILGKYPELMEGFNEFLGHCENIGFQSFLPQNFSADGFLEGVF
NKSTFKGHMARPVKIENRDRERDRELVEREKDHESERNTERERVDKGISHKATLCSNKEK
YNLWKPISELDLSDCQCCTPSYRLLPKNYPIPSTSHRTELGESVLNDHWVSVTSGSEDYS
FKHMRKNQYEESLFRCEDDRFEMDMLLESVNATTKRVEELLEMMQDPANTIRIEDHLTSL
NLRCIERLYGDHGLDVMDVIQKNASLALPVILTRLKQKQEEWSRCRSDFNKVWAEIYAKN
YHKSLDHRSFYFKQQDSKNLSTKTLLADIKEINDKMKKDDDILLAVAAKNRHPIIPNMEF
KYADVDVHEDLYRIIKYSSGEVCTSSDQLDKVMKLWSTFLESLLGVPNRNQGVGDGQDIN
LKSRVVKTSVADLAESNGNAGAIKQIKTDNNILHEQAGCGRTGLLNEDVIVTETCSHNVD
RAIWHGENLINNPHQGVVQSSVPMIDEVSRGALPNVHSEELPDSNNVVNRAEEVDTRSNQ
GNITGITGASLRTVNVGTELQGEPRATSETLPSSEGGHSGRPIMSVNTGGTVEGSKGFKP
TESPTSLRNFKIEREEGELSPTGDFEEDNFVAFGDTAIIAAAEQKDVSISREYQVRPGCG
DAAGENNADDEDEESPQRSTDASENASEAGEDASGSESGNGEECSHEDHEEEDDAEHDDE
EPKAESEGEAEGMTEAHDVEGEITSLPYSERFLNTVKPLARHVHAALHDKHEKSSKIFYG
NDSFYVLFRLHQMLYERIVSAKTNSSAAENKWRNSKDSNHPDLYAKFMSALFNLLDGSAD
NTKFEDDCRSIIGTQSYVLFTLDKLIFKVVKQLQAIVSDEMNSKLLHLYLYEKSRRAGRH
FDVVYHENARVLLHDESIYRFESYSHPSDVTRLSIQLMEYGHEKHDATAVAMDPNFSSYL
YNDFLSSVPVRKRLQGVFMGRNKRKNKGADEYSATCKATKGIQVINGLECKISCSSSKVS
YVLDTEDLLLRSRKRKRYSSDGTMSSSQTNLTQEYDTKANRFRDFVSTFMCRS
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atgaaagggctgcgggaggaggcttgtatgggttcccagctgaagcgaccaaccgtttct
cgagcggatccgtctgggcaaacccatatggcgccagcaccagccgctgttggtactaca
cccaagcttacgaccaatgatgcccttgcctatctgaaggccgtgaaggatatatttcag
gacaaaagagaaaaatacgatgaatttcttgaggtcatgaaggacttcaagagccagagg
attgatacaaatggagtaattgcgagggtgaaggagttatttaaggggcatcgggatttg
atcctggggtttaacaccttcttaccaaagggatatgagattaagctacctgaagaaaag
aaaccaattgagtttgaggaggcaattgattttgttaataaaatcaagaatcgttttgag
aatgatgaacatgtttacaagtcattcttagatatcctgaatatgtaccgtagggagaat
aagtcaatccatgaggtctatgaagaggtagcagctctctttcaaaatcatcacgatttg
cttgaggaattcacacactttttgcctgatacctcagcaacatatgctccgctgcatcat
ggacatgctggtcgagcttttccacgtcgagatgacaggagctctatgatgcctgcagta
aggcattttcatgtggataagagggacagagctcatttggcacatgctgaccgcaacttt
agtgttgatcgccctgatacagaacatgatagaaagagaagacatccaaatagggacaag
gataggaaggatgatagtgacaggaaagatcatgaacgagatgaggacttggagctagat
agtggtgatttagataatgcacagcataggcgtaaactttcgcctcgaagagctgatgat
tctactgctgagccaatgcaacaaggagctgatggccctggcatttatagcatttcatct
tcaacatttgatgataaaaatgctttgaagagtgtgtatactcgagaatttaatttctgc
gaaaaagtgaaggaaaagttgcatcctgagacctaccaggaatttttgaaatgtcttcac
atatacagccaagaaatagttactagaacagagctaaagaatctggttagcgacatccta
gggaagtatccagagcttatggaaggtttcaatgaatttctgggccactgcgagaatata
ggctttcagagttttctaccccaaaatttttctgcagatggatttctagaaggtgtgttc
aacaaaagtacgttcaaaggacatatggctaggccagttaagatagagaatagagacaga
gaaagggaccgagaactggttgaacgggagaaagatcatgagagtgagagaaacactgaa
agagaaagagttgataaaggcatctcgcacaaggctactttatgctcaaacaaagaaaaa
tataatttatggaaaccaatttcagagcttgatctctcagattgtcaatgttgtactcca
agttaccgccttcttccaaaaaattatcctataccatccactagccacagaactgaactt
ggagagtcagtattaaatgatcattgggtgtcagtgacttctggaagtgaggattattct
ttcaagcacatgcgaaaaaatcaatatgaagaaagcttatttagatgtgaagatgataga
tttgagatggatatgttattggaatcagtgaatgccaccactaagcgtgttgaggaactg
ctggaaatgatgcaagatcctgccaatactatacgcattgaagaccatcttacttctttg
aatttgagatgtattgaacggctatatggagaccatggtcttgatgtcatggatgtaatt
cagaaaaatgctagtcttgcattgccagtcatattaactcgtctgaagcaaaagcaagag
gaatggtctaggtgtcggtcagatttcaataaagtatgggcagaaatatatgccaagaat
tatcataagtcacttgatcatcgcagtttctatttcaagcaacaggattcaaagaatttg
agcacaaaaactttgttggctgatattaaagaaattaatgacaagatgaagaaggacgat
gacattcttcttgctgttgctgccaaaaataggcacccaattattcccaatatggaattt
aagtatgcagatgtagatgttcacgaggatttatatcgaatcataaaatattcaagtgga
gaagtgtgcacatcttcagaccagttggacaaagtcatgaagttatggagtacttttttg
gagtccctgttgggtgttccaaatcgaaatcaaggtgtaggagatggacaagatataaat
ttgaagagtcgtgttgtcaaaaccagtgttgcagatttggctgaaagcaatgggaatgct
ggagctattaagcaaattaaaactgacaataatattctacatgaacaagcaggttgtggc
aggactggcttactaaatgaagacgtgattgttactgaaacttgctctcataatgtagat
cgtgccatttggcatggtgaaaatcttatcaataatccacatcaaggagttgtgcagagt
agtgttcctatgattgatgaagtttctcgaggagctttgccaaatgtgcattcagaagag
ttaccagatagtaacaatgttgtaaatagagctgaagaagttgatactcgatcaaatcaa
gggaatataacagggattactggtgcatctttgagaactgttaatgttggaacagagctg
caaggtgaaccccgtgcaaccagtgaaactttaccttcttcagagggtggacactctggg
aggccaattatgtctgtaaatactggtggcactgttgaaggtagtaaaggtttcaagcct
actgaaagtcctacatcccttaggaattttaagattgaaagagaagaaggagaattgtca
cctactggagattttgaagaggataattttgtggcgtttggagacactgccataattgca
gctgctgagcagaaagatgtttccattagcagagagtaccaagtcaggcctggatgtggt
gatgctgctggtgagaataatgctgatgatgaggatgaagaaagtcctcaacgatccacc
gatgccagtgaaaatgcatcagaggcgggtgaggatgcatctggtagtgaatctggtaat
ggggaggaatgctcccatgaagatcatgaggaagaggatgatgcagagcatgatgatgag
gagcctaaggctgaaagtgaaggggaggctgaaggaatgactgaagcacacgatgttgaa
ggggaaattacatcattaccatattcagaacgatttcttaacactgtgaaacctcttgct
aggcatgtgcatgctgcattacatgataagcatgaaaaatcttctaagatattttatgga
aatgattcattctatgtgctgtttcggcttcatcagatgttgtatgaaaggatagtctct
gctaagacaaactcatctgctgctgaaaacaaatggagaaattctaaagattcaaaccat
cctgatttatatgctaaatttatgagcgctctattcaatctacttgatggttctgctgac
aataccaaatttgaagatgattgccgttccattattgggacccagtcatatgtacttttt
acattggacaagctaatcttcaaagtcgttaaacagcttcaggcaatagtctcagatgag
atgaatagtaagcttctccatctctacttgtatgaaaaatcaaggcgagctgggagacat
tttgatgttgtttatcatgaaaatgcccgggttcttctgcacgatgagagtatttacaga
tttgaaagttattcacatccttcagatgtaacccgactgtcaatccaactcatggaatat
ggacatgaaaaacacgatgctacggcagttgcaatggatcccaacttctcatcttacttg
tacaatgattttctctcaagtgtgccagtcaggaagcggttgcagggcgtcttcatggga
aggaataagcgcaaaaacaagggtgcagatgagtattctgctacttgcaaagccacgaaa
gggattcaagtcatcaacggcttggagtgcaagatatcttgcagttcatctaaggtgtct
tacgtgctagatactgaggatttattgctccggtcaagaaagagaaaaagatattcaagc
gacggaactatgtcgagtagccaaacaaacttgacacaagaatacgacactaaagcaaat
cgattccgcgacttcgtttccactttcatgtgcagatcctaa
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