Zingiber officinale (ginger): 122051473
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Entry
122051473 CDS
T08725
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
zof03015
mRNA surveillance pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122051473
09122 Translation
03013 Nucleocytoplasmic transport
122051473
03015 mRNA surveillance pathway
122051473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122051473
03041 Spliceosome [BR:
zof03041
]
122051473
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122051473
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
122051473
Spliceosome [BR:
zof03041
]
Complex C
Other components
EJC/TREX
122051473
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122051473
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
122051473
NCBI-ProteinID:
XP_042468563
LinkDB
All DBs
Position
3A:25074917..25080370
Genome browser
AA seq
428 aa
AA seq
DB search
MGEVKDNDAYEEELLDYEEEEEKAPDSVAAKVSGEAVKKGYVGIHSSGFRDFLLKPELLR
AIVDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVVGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKIAVFYGGVHIMKHKDILKNDCPHIVVGTPGRVLA
LARDKDLNLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLTKYKNFKEGLKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggggaagtcaaggataacgatgcttacgaggaggagctcctggactacgaagaggag
gaagagaaggcccctgactcggttgctgcgaaggtctctggtgaagcggtgaagaagggc
tatgttgggattcacagttccggattcagagacttcctgttgaagccagaactccttcgt
gccatcgtggattgtggttttgagcatccttctgaagtacaacatgaatgtattcctcaa
gctattctgggaatggatgttatttgccaagcaaagtctggaatgggcaaaactgctgtt
tttgttctttctactcttcagcaaattgagcctgttgtaggccaagttgctgcacttgtg
ctgtgccatacaagagaattggcctaccagatttgccatgagtttgagcgattcagcaca
tacttaccggacatcaaaattgctgtattctatgggggagttcacatcatgaagcacaag
gacatactaaagaatgactgcccacatatagtcgtaggcacaccaggaagagtgttggcg
ctagcaagagataaggatcttaatttgaagaatgtgaggcatttcattcttgatgaatgt
gataagatgctggagtcacttgacatgcggcgggatgtacaggaaattttcaaaatgaca
ccacacgacaaacaagtcatgatgttttcggcaactctcagcaaggagattcgccctgtg
tgcaagagattcatgcaagatcctatggaaatatatgtagacgatgaggccaagctgaca
cttcatggactagtacagcactacatcaaactgactgaattggaaaagaaccgaaagcta
aatgatcttttggatgcactagacttcaatcaagttgtgatttttgtgaaaagcgtgagc
cgagccgcagagttgaacaagttgcttgtagaatgcaattttccatccatctgtatacac
tctggcatgtcacaggaagaaaggttaacaaagtataagaactttaaggaagggctcaaa
agaattcttgttgctacagatctggttgggaggggaattgatattgagcgtgttaacatt
gtaattaattatgatatgccagattctgctgacacatacctgcaccgggttggaagggct
ggccggttcggaaccaaagggctcgctattacatttgtctcatcagcagctgattctgat
gttcttaatcaggtacaagagaggtttgaggtggacataaaggagttgcctgagcagata
gacacttcgacatacatgccttcgtaa
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