Zingiber officinale (ginger): 122051518
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Entry
122051518 CDS
T08725
Name
(RefSeq) protein TSS-like isoform X1
KO
K03255
protein TIF31
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
zof03012
]
122051518
Translation factors [BR:
zof03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122051518
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_10
TPR_12
eIF3_p135
CLU_N
TPR_2
CLU
TPR_MalT
TPR_9
TPR_8
Alpha-amy_C_pro
PAM2
Motif
Other DBs
NCBI-GeneID:
122051518
NCBI-ProteinID:
XP_042468629
LinkDB
All DBs
Position
3A:26163570..26184636
Genome browser
AA seq
1812 aa
AA seq
DB search
MAPKAGKAKVHRIKGEKKKKEEKVLPAVVDVTVETPDYSLLTLKGISTDKILDVRKLLAV
HVEACHLTNFSFSHEGRGERLKDTVEIVSLKPCHVSIVEEEYTEELAVAHIRRLLDVIAC
TTAFGASPERNAGPESPSSAGGGGGKGDSRPGDAAKPGEANGEESKDEGAEISGSKKVAS
PTSATVSVHKDDLLYPPPKLGQFYEFFSFSHLTPPLQYIKMSSRSFMDDKKEDDFFQIDV
KICNGKLVTVIATKDGFYPNGKRSLLSHSLVGLLQQISRAFDSAYKSLMKAFIEHNKFGN
LPYGFRANTWVVPPIAADLPSIFPPLPAEDETWGGNGGGQGRDGKKDRRPWAKEFAILAA
MPCKTPEERQVRDRKAFLLHSLFIDVAVMKAVKVIQQLIIKNESSNESNYPSAAVLREEQ
VRDLRITVTKDNTNASTKLDVKLDGIQAPGKSSKDLCQRNLLKGITADESATVHDTATLG
VVVVRHCGYTAVVRVPTDAGLSESPLTEEEIHIEEQPEGGSNSLNVNSLRMLLHKSSSCG
IQKSHCADIEDLHSFRSLVRKVLEDSLLRLDEETKERKMSIRWELGACWVQHLQNQSGNT
DSKKSEDSKVETTVKGLGKQFGQLKQIKKKVQDNGGKTNSANENATSFGVGFIKEHVDVS
RLKEDKEMMLQKLLPEAEYMRLKESDTGLHIKSPDELIEMAHKYYEDIALPKLVADFASL
ELSPVDGRTLTDFMHTRGLQMCSLGRVVELADKLPHVQSLCLHEMIARAYKHILQAVIAT
VGDMSDMAGTVASCLNVLLGSVPADNTDIYLNNDISLKHKWLEYFLSKRFGWKLKDKDCN
DLRKYAILRGLCHKVGLELVSRDYDFETPHPFRKSDIVSMVPVYKVRIYSFTCYFVFLFS
VTDCSDLVLQHVACSSADGRTLLESSKTSLDKGKLEDAVNYGTKALAKLVAVCGPYHRMT
AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE
LALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLG
TDHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLRILQAKLGSEDLRTQDAAAWLEYFES
KALEQQEAARNGTPKPDASIASKGHLSVSDLLDYINPEAEQRSREIQKKQARAKIKDRNG
QNQSETVEIDDDKVDMPKQERMATNDKENNSYVQPPMELKDENPNIVVIHVSRSNPEDSV
MEEDPTEDGWQEAVPKGRSLTNQKTVARRPSLAKINTNSLTNVENPRYRAKSSPNTSSPG
TPANDDSMPASASPASKKFIKNLSFNQKASSIAASMDADPASAATAPRLVSSPIGNTSPS
TRKNLSYKEVALAAPGSIIKVAEDKVIAETHSDNQDREMSHGIREQRTDDSKKEMSEHKN
LEGTKHASTHEEFKGSVVEGDNQEKMNSIMAEASLKVASSVVEEKDAMVSNPKDSITLEE
YNATSAESQRISEISEKTTQGKEATAIQECCEISVIGSHEKELELRVSASDGTDMDQTNA
AAYMEEVSNAGEEMQEQVSSGCESEPIKEKNNEIAKEPSSKLSAAAAPFNPSTIAVFSSV
ALPSFNDHGGILPPPLNIPPMVAIPVRKHLHQSATSRVPYGPRITGGYNRSGYRSHRNKL
PFQNGELASQDGNSLSPRMNPNAAEFVPAQPLIQNSYPVSPSDSQTSPNSISLSPQCLPS
SPDSLMASPTPDEALVKENDNITKVEQSTEGEDATINAEQDTPEGTISEDLQLVDITPEP
AKSIDEQECLVD
NT seq
5439 nt
NT seq
+upstream
nt +downstream
nt
atggctcccaaggctgggaaagccaaggttcatagaatcaaaggcgagaagaagaagaaa
gaagagaaagttctgccggcggtggtggatgtcaccgtcgagacgccggactactcgctg
ctcaccctcaagggtatatcgaccgataagatactagacgtgcgtaaattgttggccgta
cacgtggaggcttgccacctaactaatttctctttttcccatgaggggcgaggtgaaaga
ctaaaagatacggtggaaattgtctcgctaaagccttgccacgtcagcattgtggaagag
gagtacacggaggagctcgccgtggcccacatccgtcgcctgctcgacgtcatcgcctgc
accaccgccttcggagcttctccggagaggaatgctggaccagaaagtccgtcttccgca
ggtggcgggggagggaagggcgattcgcggcccggcgacgctgcgaagccgggcgaagca
aacggggaggaatctaaagatgaaggcgctgaaatttccggaagcaagaaggtggcttct
cccacctccgctacggtttctgtgcacaaggacgatctgttgtaccctccgcccaagctc
ggtcaattctacgagttcttctcgttctcccaccttactccgccactccaatatataaag
atgtcttcgcgatcatttatggacgataaaaaggaggatgacttctttcagattgatgtg
aagatttgcaatgggaaacttgtgaccgtaatcgctacaaaagatgggttctatcccaat
gggaaaagatctcttctaagtcattctttagttggcttgttgcagcaaataagcagagcc
tttgatagtgcatacaagtcgctgatgaaagctttcattgagcacaataagtttggaaat
cttccatatggatttagagcaaacacttgggtggtccctccaatagctgcagatctgcca
tcaatatttcctcctcttcctgccgaagatgaaacttggggtggtaatggtggaggccag
ggacgagatggcaagaaagatcggaggccatgggccaaagaatttgcaatccttgcagca
atgccttgtaaaacaccggaggagagacaagtccgagataggaaagccttccttcttcac
agcttattcattgatgttgcagtcatgaaagctgtcaaggttattcaacaactgatcatc
aagaacgagagctcaaatgaatcaaattatccctctgctgcagttttacgtgaagaacaa
gtcagagatctaagaatcacagttacaaaggacaatacgaatgccagcactaaattggat
gtgaaattggatggaattcaagccccaggaaagtcttctaaggatctttgtcaacgaaat
ttactaaaaggaatcaccgcagatgagagtgcaactgttcatgatactgccacccttggt
gtagtagttgttagacactgtggctatactgctgttgtcagagttccaactgatgctggt
ttaagtgagagtcctttgacagaagaggaaattcatattgaagagcagcctgagggaggt
agtaactctttaaatgtcaacagtttgagaatgcttttgcacaaatcctcatcatgtgga
atccagaagtcccactgtgcagacattgaagatttacattccttcaggtctttggtgcga
aaagtactagaagatagtctactgaggttagatgaagaaaccaaagaacggaaaatgtca
ataagatgggagctaggggcttgctgggtgcagcatttacagaatcaatcaggaaatact
gattccaagaaaagtgaagacagtaaagttgaaacaaccgtaaaagggcttggtaaacaa
tttggtcaattgaaacagataaagaagaaggtacaagataatggtggaaaaaccaattct
gcaaatgaaaacgctacttcttttggcgtgggcttcattaaggaacatgtggacgtttct
aggcttaaggaagataaggaaatgatgctacaaaaattgcttcctgaagcagaatacatg
cgcctcaaagaatccgatactggtcttcatattaagtcaccagatgagttgattgagatg
gcacacaaatactatgaggatattgctctgccaaagttggtagcagattttgcttcactc
gaactttctcctgttgacggaaggacgttgacagattttatgcataccaggggtttgcag
atgtgttcacttggacgcgtggttgaacttgcagacaagcttcctcacgtgcagtccctt
tgtttgcatgaaatgatagctcgagcatataagcatatacttcaagctgtcattgcaact
gttggcgatatgtctgatatggctgggaccgttgcatcttgtttaaatgtattgcttgga
tcagttccagctgataatacagatatttacttgaacaatgacatcagtctcaaacataag
tggctggaatattttctatcaaagagatttgggtggaaattgaaagataaagactgcaat
gacttgaggaagtatgcaattctacgcggtctttgtcacaaggtaggactagagcttgtg
tcaagagactatgactttgagactccacatccttttaggaaatcagacattgtgagcatg
gttcctgtatacaaagtaagaatttatagttttacatgttattttgttttccttttttcc
gtaactgattgttctgacttggtattgcagcatgttgcctgctcatcggctgatggacgc
actttgctggagtcatctaagacttctttagacaagggaaaactggaggatgctgttaac
tatgggaccaaggcgttagcaaaactagttgcagtatgtggtccataccacagaatgaca
gcaggagcatacagtctgttggctgtagttctctaccatacgggtgacttcaaccaggca
accatctaccaacaaaaggctttggatatcaatgaaagggaactaggtcttgatcatcca
gatacaatgaaaagctatggtgatcttgctgttttctactatcgtcttcaacatacagaa
ctggcactgaagtatgttaatcgtgcgttatacctactgcacctgacttgtggcccttcg
catcctaacactgctgcaacatacataaatgtggccatgatggaagaagggttaggaaat
gtgcatgttgctcttagatacctacatgaggcgttaaaatgcaatcagagactactcgga
actgatcatatacagactgcagctagttatcatgctattgccattgctctgtctttgatg
gaagcttattctttaagcgtccagcatgagcagacaactctacgcatactacaagcaaag
cttggatcagaagatctacgaacacaggatgctgctgcatggcttgaatattttgagtct
aaggctctcgagcaacaggaagctgcacgaaatggtactccaaagcctgatgcttccatt
gcgagcaaaggtcatttgagtgtatcagaccttttggattatatcaatcctgaggcagaa
caaagatccagagaaattcaaaagaagcaagcccgagcaaagataaaagatagaaatgga
caaaaccaatctgaaactgtggagattgatgatgacaaggtcgatatgccaaagcaggaa
cggatggcgaccaatgataaggaaaacaactcctatgttcagccacccatggagcttaag
gatgagaatcccaatatcgttgtcattcatgtctcaagatcgaatccggaggacagtgtt
atggaggaagacccaactgaagatggatggcaagaagctgtccccaagggacgatctctc
acaaaccaaaaaacagtagcaaggagacctagtttggccaaaatcaatacaaattcacta
actaatgtagaaaatccacgatatcgagcaaaatcttcccccaatacatcttctcctgga
acaccagcaaatgatgatagcatgcctgcttctgctagccctgcttcaaagaagttcatc
aagaatctcagcttcaaccagaaagcaagcagcattgctgcctcaatggatgcagatcct
gcctccgcagctacagctcccaggctggtttcatcaccaatagggaacactagtccctcg
accaggaaaaacttatcatacaaagaagtggcattggctgctccaggatctatcatcaag
gttgcagaagataaagtgatagctgaaacccattcagataaccaggatagggaaatgtca
cacggaataagggaacagagaactgatgattctaaaaaggagatgagcgaacataaaaat
cttgaaggaaccaaacatgcatctactcatgaggagtttaagggctctgttgtggaagga
gataaccaagagaaaatgaattctatcatggcagaagcatcactgaaagtggcaagttct
gtagtggaagaaaaagatgctatggtttctaatccaaaagattccatcactcttgaagaa
tataatgcaacctcagcagaatctcagagaatttcagaaataagtgaaaaaactacgcaa
ggcaaggaagctactgcaatacaagaatgctgtgaaatatcagtcataggctctcacgag
aaggaattagagttaagagtatctgcttcggatggtactgatatggaccaaactaatgct
gctgcttatatggaagaagtgagcaatgctggtgaagaaatgcaggaacaagtatcaagt
ggatgtgaaagtgagcctataaaagagaagaacaatgaaatagccaaagagcccagcagc
aaactatctgcagctgctgctccattcaatccatcgacaatagcagtttttagctcagtc
gcattgccaagcttcaatgatcacggaggaattttaccaccacctttaaatatccctcct
atggtagcaatccctgtgcgtaagcatctccaccagtctgctacttcgagggtaccctat
ggtccacggataactggtggttacaatcggtcaggttatcgtagtcatcgcaacaaattg
ccatttcagaatggtgagttggcttctcaggatggtaattctttgagtccaagaatgaat
cctaatgctgctgaatttgttcctgcccaaccattgattcagaacagctacccagtgtcc
ccaagtgattctcaaacatcaccaaacagtatttcactctcccctcaatgtttaccttca
tcgccagatagtctgatggcatcaccaacaccagatgaagctcttgtgaaagaaaatgac
aatatcactaaagttgaacaatctactgaaggtgaagatgctactataaatgctgaacag
gatactcctgaaggaactatttctgaagaccttcagctagtagatatcacaccagaacca
gcaaagtctatcgacgagcaagaatgtttggttgactag
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integrated database retrieval system
