KEGG   Zingiber officinale (ginger): 122051765
Entry
122051765         CDS       T08725                                 
Name
(RefSeq) splicing factor 3B subunit 1-like
  KO
K12828  splicing factor 3B subunit 1
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122051765
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:zof03041]
    122051765
   03036 Chromosome and associated proteins [BR:zof03036]
    122051765
Spliceosome [BR:zof03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    122051765
 Complex B
    122051765
 Complex C
   U2 SnRNP specific factors
    122051765
Chromosome and associated proteins [BR:zof03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    122051765
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_ECM29 HEAT_EF3_N Htt_N-HEAT_1 Cnd1 HEAT_2 XMAP215_CLASP_TOG Vac14_Fab1_bd UME Adaptin_N MMS22L_C CNDH2_M
Other DBs
NCBI-GeneID: 122051765
NCBI-ProteinID: XP_042468964
LinkDB
Position
3A:complement(39348044..39353626)
AA seq 1269 aa
MDNLDEEITKAQEERRKMEDVAMLTSVTFDSDLYGGGPDRFEGYERSIAVNDEEEEQDGD
SRELARRMASYTGPKSLKEIPRVPDGDEDSGFKKPQRIIDREDDYRRRRLQRIISPDRND
PFASGEATPDPAVRTYADVMREQALQRQKEDILKEIAKKKEEEKEKAAAEPAPTAQKRRN
RWDQSQEADGGAAKKAKPSSVSSDWDAPDSTPGIGRWDATPTPGRVADATPSISRRNRWD
ETPTPGRLADADATPAAGGVTPGATPAGMTWDATPKLAGLATPTPKRQRSRWDETPATMG
SATPLPGAVTPAAAFTPGVTPVGGVDLATPTPGAINLRGAMTPEQFNLLRWERDIEDRNR
PLTDEELDAMFPQEGYKILNPPASYVPIRTPARKLLATPTPMGTPLYSIPEENRGQQFDV
PKEAPGGLPFMKQEDYQYFGALLNEEEEEQLSPEEQKERKIMKLLLKVKNGTPPQRKTAL
RQLTDKSREFGAGPLFNKILPLLMQPTLEDQERHLLVKVIDRILYKLDELVRPFVHKILV
VIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVA
SALGIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILMGCAVLPHLRSLVEIIEQGLSD
ENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPL
MDAVYASYYTKEVMIILIREFQSPDEEMKKIVLKVVKQCVSTEGVESDYIRNDILPEFFR
NFWVRRMALDRRNYKQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVV
ANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNALGQKVKPYLPQICGT
IKWRLNNKSAKVRQQAADLISRIAIIMKQCKEEQLMGHLGVVLYEYLGEEYPEVLGSILG
ALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREW
MRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVA
IAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLED
ALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNVFETSPHVINAVMEAIE
GMRVALGAAVILNYCLQGLFHPARKVREVYWKIYNSLYIGSQDALVAGYPTLEDDGNNLY
SRPELAMFV
NT seq 3810 nt   +upstreamnt  +downstreamnt
atggataatttggacgaggagatcaccaaggcgcaggaggaacgacggaagatggaagat
gttgctatgctcacctccgtcaccttcgactccgacctttacggcgggggccccgaccgt
ttcgagggctacgagcgctccatcgccgtcaacgacgaggaggaggagcaggacggcgac
agccgcgagctagctcgccggatggcctcctacaccggccccaagtctctcaaggagatc
cccagggtgccggatggcgacgaagattcggggttcaagaagccgcagcggatcatcgac
cgggaggatgactaccggcgccggaggcttcagaggatcatttcacctgataggaacgat
ccatttgcctccggggaagctacgccagaccccgcagttaggacgtatgcagatgtgatg
cgggagcaggccttgcagcgacagaaagaggacattttgaaggagatagctaagaagaag
gaggaggagaaggagaaggctgctgctgagccagcccctacggcgcagaagaggaggaac
aggtgggaccaatcccaggaggctgatggaggcgctgccaagaaggcaaagccaagctcg
gtgtcatctgactgggatgctcccgattccacccctgggattgggcggtgggatgcaaca
ccgactccagggagggttgcggatgcaacgccctctatctcacgcagaaacagatgggat
gaaactcctacccctgggagacttgctgatgccgatgctactcctgccgcaggtggtgtc
acccctggtgctacgccagctggtatgacatgggatgctactcccaagcttgctgggctt
gcaacaccaacgcctaagcgccaaaggtcaaggtgggatgagactcctgcaaccatgggc
agtgccacgccattacctggcgctgtgactcctgctgcagcattcactcctggtgtcact
cctgttggtggtgttgatcttgccactccgacacctggtgcaataaaccttcgaggtgct
atgactccggaacagtttaatctgttgcggtgggagagggacattgaagatagaaatagg
ccattgacagatgaggagctcgatgctatgtttccacaggaagggtacaagatattgaat
cctcccgcatcctatgttcccatcaggactcctgcaaggaaactcttggctacacctact
ccaatgggtacgccactttattcgataccagaggaaaaccgtgggcaacagtttgatgtc
ccaaaggaggcacctgggggcttgccgttcatgaaacaagaggactaccaatactttggg
gctctactgaatgaagaagaggaggaacagctgtctccagaagagcagaaggaaagaaag
atcatgaagctattgctgaaggtgaagaatggtactcctccacagaggaaaacagccctg
agacaacttacagataagtccagagagttcggagctggcccactgttcaacaaaattctg
cctttgctcatgcagccgacacttgaagatcaagagcgtcatcttctggtaaaagttatt
gacaggattctatataagttggatgagttggtcaggccttttgttcataagatccttgtg
gttatagagcctcttctaattgatgaggattactatgcccgtgttgaaggaagagagata
atctccaacctcagcaaagcagctggtcttgcaactatgattgctgccatgaggccggat
attgataatatagatgagtacgtgaggaatacaacagcacgagctttcagtgttgtggct
tctgctttaggtattcctgctttgttaccatttctgaaggctgtttgtcagagtaagaaa
tcttggcaagcacggcacactgggattaagattgtccagcagattgctattctcatggga
tgtgctgtgctgccacatcttaggtctctggtggaaattatagagcagggtcttagtgat
gagaaccaaaaggtgagaacaattactgccttgtctcttgcagcacttgcagaagcagct
gctccttatggaattgaaagctttgattcagtgttgaagcctctttggaagggtatcagg
tctcatcgtggaaaggttcttgctgccttcctgaaggcgattggttttattatccctctg
atggatgctgtttatgcaagttactatactaaagaagtcatgattatccttatccgtgag
ttccagtcacctgatgaagaaatgaagaagattgtgctaaaagttgtcaaacagtgtgta
agtacagaaggggttgagtctgactacatccgtaatgatattcttcctgagtttttcagg
aatttctgggttaggaggatggcactggaccgtaggaactacaagcagcttgtggagaca
actgtagaaattgcaaataaggttggtgtggcagatattgtagggagaatagtggaggat
ctcaaagatgagagtgaaccttataggcgtatggtgatggagacaattgaaaaagtggtg
gctaacttgggagcatcagacatcgatgctagattagaagaacttcttatagatgggatt
ttgtatgccttccaggagcagacaagcgatgatgcaaatgttatgcttaatggatttggt
gcagtggtcaatgctttgggccagaaggtcaagccttatcttcctcagatttgtggtacc
ataaagtggcggttgaacaacaagagtgccaaagttaggcagcaagctgcagacctgata
tcacggattgccatcatcatgaagcagtgcaaggaagaacagctgatgggccatctgggt
gttgtcctgtatgagtatctgggagaagaataccctgaagtcttaggttccatcttggga
gcacttaaagctatagtcaatgtcatcggtatgactaagatgacaccacctattaaggat
ctacttcctcgtttgacaccaatcttgaaaaacagacatgagaaggtgcaggagaattgc
attgatctcgttggtagaattgcagaccgtggagctgaatttgtgccagctagggagtgg
atgaggatttgtttcgagcttcttgagatgttgaaggctcacaagaaggggatccgaaga
gctacagtcaacacttttggttatattgcaaaggcaatcgggccacaagatgttcttgca
acacttttgaacaatttgaaagttcaagagcgtcaaaaccgtgtgtgtactactgtggct
attgctatagttgctgaaacatgctcgcctttcactgttcttccagctctcatgaatgaa
taccgtgttcctgagctgaatgtgcagaatggagttcttaaatcactctctttcctcttt
gagtacattggtgagatgggtaaagactacatctatgctgttaccccactgttggaggat
gctttgatggacagggatctggttcatcgtcagactgctgcttctgctgttaagcacatg
gctcttggagttgctggtttaggttgtgaggacgcacttgtccacttgcttaattatgtc
tggcccaacgttttcgagacttctcctcacgttattaatgctgtgatggaggctattgaa
ggaatgagggttgcacttggtgcagctgtcattctaaattactgccttcagggtcttttt
caccctgcaaggaaagttagggaggtctactggaaaatttacaattctctttacattggc
tcccaagatgctttagtagctggttatcccacactagaagatgatggaaacaatttatat
agccgaccagagcttgcaatgttcgtctga

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