Zingiber officinale (ginger): 122052212
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Entry
122052212 CDS
T08725
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
zof04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122052212
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
122052212
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
zof01009
]
122052212
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122052212
03036 Chromosome and associated proteins [BR:
zof03036
]
122052212
Protein phosphatases and associated proteins [BR:
zof01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
122052212
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
122052212
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
122052212
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Motif
Other DBs
NCBI-GeneID:
122052212
NCBI-ProteinID:
XP_042469566
LinkDB
All DBs
Position
3A:complement(104563274..104575206)
Genome browser
AA seq
514 aa
AA seq
DB search
MNGHSGEKGGPAASSSSVTPPLDWKFSQVFGERLSGEEVQEVDIISAIEFDKTGDHLATG
DRGGRVVLFERTDTRNLGSRKDLEAQDYQISRHAEFRYKTEFQSHEPEFDYLKSLEIEEK
INEIGWCQTANGALSLLSTNDKTIKYWKVQEKKVKQIAEMSLDASRVVGNGCSGSSTTNS
PTPSLSNGCSGSTYLSNDLSFPPGGFPSLRLPVVVTSHEKSLVARCRRIYAHAHDYHINS
ISTNSDGETFISADDLRINLWNLEISSQSFNIVDVKPANMEDLTEVITCAEFHPVHCNML
AYSSSKGSIRLIDLRQSALCDNHSMLFENHEAPGSRSFFTEIIASISDIKFANDGRHILS
RDYMTLKLWDINMDSAPVATFDVHEYLRPRLCDLYENDSIFDKFECCLSGDGLRVATGSY
SNLFRVFGCVPGSNESTTLEASKNPMRKQAQNATRASRSLCSLTRVVRRGAEIPSVDANG
NSFDPAIKLLHLAWHPTENLIACAAANSLYMYYA
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgaacgggcacagtggcgagaaaggtgggccggcggcgtcatcgtcgtccgtgacgccg
cctttggattggaagttctcgcaggtctttggggagcgcctatcgggggaggaggtccag
gaagtggatatcatctcagcaatagaatttgataaaactggagaccatcttgcaactgga
gatagaggaggccgtgttgttttgtttgagaggacagatactagaaatcttggctctcgg
aaggatctagaggcacaggattatcagattagtaggcatgctgagtttcgctacaaaact
gagtttcaaagccatgaaccagagtttgactatctcaaaagcttggaaatagaggagaag
attaatgaaatcggatggtgtcaaacagctaatggtgctttatcacttctctcaactaat
gataaaacaattaaatactggaaggtacaagaaaagaaggtcaaacaaattgctgagatg
agcttagatgcttcaagggttgtcggaaatggctgcagtggtagctcaactacaaatagt
cctactccatctctttctaatggatgctccggaagcacgtatctgagcaatgacttatcc
ttccctcctggagggtttccttcactacgtttgccagtggtagtgactagccatgagaag
agccttgttgcgagatgtcgaagaatatatgctcatgctcatgattaccacataaactct
atttcaactaacagtgatggtgagacatttatatcagcagatgatcttcgaataaatttg
tggaatttggaaattagcagtcagagctttaatattgttgatgtcaaacctgcaaatatg
gaagatttaacagaggttataacttgtgctgaattccacccagtccattgtaatatgtta
gcatatagtagctcaaagggatctatccggcttatagatttgcgtcaatcagcattatgt
gataaccattctatgctgtttgagaatcatgaggcacctggttcaagatcatttttcact
gagatcattgcctctatttcggatatcaaatttgcaaacgatggaagacacatcctaagt
cgtgattatatgaccctcaagctttgggatataaacatggattcagctccagtcgcaacc
tttgacgttcatgagtacttgaggcctaggttgtgtgatctatacgagaatgattccatc
tttgacaaatttgaatgctgtcttagtggagatgggttgcgtgtggcaactggttcttac
agtaacctttttcgtgtatttggctgtgttcctggaagcaacgaatcaacaactttagaa
gccagtaaaaatccaatgaggaaacaagcgcaaaacgctacaagagcttccagatctctt
tgcagtttgacacgcgtcgtccgacgaggagcagaaatccccagtgtcgacgccaatggg
aactcattcgatcccgcaatcaaattgcttcacttggcatggcacccaactgaaaatttg
atagcctgtgccgctgcaaacagcttgtacatgtactacgcataa
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