Zingiber officinale (ginger): 122052301
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Entry
122052301 CDS
T08725
Name
(RefSeq) replication factor C subunit 4-like
KO
K10755
replication factor C subunit 2/4
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03030
DNA replication
zof03410
Base excision repair
zof03420
Nucleotide excision repair
zof03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
122052301
03410 Base excision repair
122052301
03420 Nucleotide excision repair
122052301
03430 Mismatch repair
122052301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
zof03032
]
122052301
03036 Chromosome and associated proteins [BR:
zof03036
]
122052301
03400 DNA repair and recombination proteins [BR:
zof03400
]
122052301
DNA replication proteins [BR:
zof03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
122052301
DNA Replication Termination Factors
ELG1-RFC complex
122052301
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
122052301
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
122052301
Check point factors
HRAD17(Rad24)-RFC complex
122052301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_14
Rad17
Mg_chelatase
AAA_22
AAA_16
RCF1-5-like_lid
nSTAND3
AAA_11
Viral_helicase1
RuvB_N
AAA_5
AAA_assoc_2
AAA_28
AAA_19
DNAX_ATPase_lid
MeaB
AAA_25
ABC_tran
AAA_18
bpMoxR
AAA_30
AAA_24
IstB_IS21
AAA_3
NTPase_1
RNA_helicase
T2SSE
DO-GTPase1
cobW
NPHP3_N
ATPase_2
Motif
Other DBs
NCBI-GeneID:
122052301
NCBI-ProteinID:
XP_042469701
LinkDB
All DBs
Position
3A:complement(113320011..113326153)
Genome browser
AA seq
339 aa
AA seq
DB search
MASATSPPPSSSSSSSIPYDVPWVEKYRPAKVSDIVGNNDAISRLEVIARDGNMPNLILS
GPPGTGKTTSILALAHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVTLTPGRH
KIVSLDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCALVRFTRLSE
QEILGRLMVVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVC
DQPHPLHVKNMVRNVLEGNFDDACSGLKQLYDLGYSPTDIITTLFRVVKNYDMAEYLKLE
FLKETGFAHMRICDGVGSYLQLSGLLAKFALARETAKAP
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgccacttcccctcctccgtcctcctcctcctcctcctccatcccctacgac
gtcccttgggtcgagaagtaccgtcctgccaaggtctctgacattgtcggcaacaacgac
gccatctcccgcctcgaggtcatcgctcgcgacggtaacatgcccaatctcatcctctcg
gggcctcctggtaccgggaagaccacgagcatccttgctcttgcgcacgagttgctggga
cctaattaccgtgaggccgtcctcgagctgaacgcgtccgatgacaggggcatcgatgtt
gtcaggaacaagatcaagatgtttgctcagaagaaagtgacactgacccctggtcgccac
aagattgtaagtttggatgaggctgatagtatgacttctggggctcaacaagcactgaga
agaacgatggagatttattcaaataccaccaggtttgctcttgcctgcaacacttcgtct
aagataattgagccaattcagagcagatgcgcgcttgttcgctttacaagattgtcagag
caagagattcttggccgtcttatggtggttgtggaggcagaaaaagtaccttatgtaccc
gaaggcctcgaagccattatatttactgctgatggtgatatgcggcaagctttgaacaat
ttacaagctactttcagtggatttcgttttgttaatcaagataatgtgttcaaggtttgt
gatcagccccatccattgcacgtaaagaatatggttcgcaatgtgcttgaagggaatttt
gatgatgcatgttctggcttgaaacaactctatgatctgggttactcccccactgacatc
ataaccaccctcttccgtgtggtcaagaattatgatatggctgaatatttaaagctggaa
tttctcaaggagacaggatttgctcatatgagaatctgtgatggagtaggttcctacctt
cagctctcaggtcttctggcaaagtttgcgctggctagggaaactgcaaaagctccatag
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