Zingiber officinale (ginger): 122052306
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Entry
122052306 CDS
T08725
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122052306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122052306
Enzymes [BR:
zof01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122052306
Spliceosome [BR:
zof03041
]
Complex C
Other components
Step II factors
122052306
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
AAA_22
DEAD
AAA_19
ABC_tran
nSTAND3
AAA_30
NPHP3_N
AAA_16
SLFN-g3_helicase
PhoH
AAA_29
ATPase_2
Sigma54_activat
Helicase_RecD
NB-ARC
DAP3
Sigma54_activ_2
AAA_23
Flavi_DEAD
TsaE
T2SSE
NACHT
AAA_33
KinB_sensor
Motif
Other DBs
NCBI-GeneID:
122052306
NCBI-ProteinID:
XP_042469708
LinkDB
All DBs
Position
3A:114037792..114073639
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AA seq
703 aa
AA seq
DB search
MAVLPINKFEEKIVETVEENSVVVIIGETGSGKSTQLSQILHRRGYTRSGAIAVTQPRRV
AAVSVSRRVAFELGVRLGEEVGYAIRFEDRTSEKTCIKYLTDGCLLRESLSNPELNQYSV
IILDEAHERSLNTDILLGLMKRLTKRRTSNFKVLITSATLDGVKVSRFFSGCPVLNVPGT
LFPVEKFYSTERPTNYVESCLKTALDIHLREPLGDVLIFMTGQDDIDKMVSRLEDSIQKL
EEGSCVDAIVLPLHGSLPPEMQVRVFSPAPPNCRRFIVSTNIAETSLTVDGVVYVIDSGF
VKQRQYNPSTGMYSLDIVQISRVQADQRAGRAGRTRPGKCYRLYPISVYNEEFLDATIPE
IQRSSLAGTVLYLKSLSLSDIDILKFDFLDPPSRESLEDALRQLYLIDAIDENGQITDIG
KSMAELPLEPSLARTLIEANELGCLSEALTVAAMLSAEVTIPPSRSKNKEKKRKQQFSKL
PDGCGWGDHIQLLQVFESWDHAFYDPSWCTNYELQVRSMMFSKDVRNQLSQIVHKIAKGP
LDVESGIMQNKSDKNYRKLRRALCKGYGNQLAERMIHHNGFHTLGYRSQLVQVHPSSVLE
ADEDGQLPDYVVYHELISTSRPFMRNVCAVEISWVQTILRKLEKMNIHKLSSGGSDTLES
HEIAKEGNLTLPVERANTDKKSDSTDSKIQAARERYLARKAKK
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggccgtcctccccatcaacaagttcgaggagaagatcgtagagaccgtggaagagaac
tcggtggtcgtaattatcggcgagaccggatccggaaagagcacccagctctcccagatc
ttgcatcgccgtggctacactcgttccggcgcaatcgctgtcacccagcctcgccgtgtc
gcagcggtctccgtctctaggcgggtagcatttgagcttggtgttcgacttggtgaagaa
gttggttatgcaattcgttttgaagatcgaacctctgaaaaaacttgcattaagtaccta
actgatggttgtcttcttcgagaaagtctatctaatccagagctcaatcaatactcagtt
attattttggatgaagctcatgaacgtagtttgaacactgacattttactgggcttaatg
aagcgcttaaccaagagacgcacctcaaattttaaagttcttatcacttcagctacccta
gatggcgtcaaagtatctagatttttctctggatgtcctgtattgaatgtccctgggaca
ttatttcctgtggaaaaattttacagcactgagcgccctacaaattatgttgaatcttgc
ctgaaaactgctcttgatatccatctgcgtgaaccacttggggatgtcttgatttttatg
acaggacaggatgatattgataaaatggtatccagactagaagatagtatccaaaagctt
gaagaaggttcctgtgtggatgctattgtcctcccacttcatggctctttaccaccagaa
atgcaggttcgcgtattcagtccagcaccaccaaattgtagacgatttattgtttcgaca
aatatagcagaaacttccctcactgttgatggtgttgtgtatgtcattgattctggattt
gtgaagcagcggcagtacaacccatcaactggaatgtattctcttgatatcgttcagata
agtagggttcaagctgatcagcgagctggccgagctggaagaactcgtcctggcaagtgt
tacagattatacccgataagtgtttacaatgaagagtttcttgatgccacaataccagaa
attcaacgatcatctcttgctggaactgttctgtacctgaagtcattaagcctttctgac
attgacatcttgaagtttgattttcttgatcctccatcacgtgaatcattagaagatgct
ttaaggcagttatacctaattgacgcaatcgatgaaaatggacaaataactgatattgga
aaatctatggctgagcttccattggagccctcactagcaagaacgttgattgaggcaaat
gaacttggatgtttgtctgaggctttgactgtcgctgctatgttatcagcagaagttaca
attcctcctagtcgaagtaagaataaagaaaaaaagagaaaacaacaattttccaaacta
cctgatggttgtgggtggggtgatcatatccaactgcttcaggtgtttgaaagttgggat
catgctttctatgatccaagttggtgcacaaactatgaattacaggttcgcagcatgatg
tttagcaaggatgtgaggaatcaactatctcagattgtgcataagatagcaaaaggacca
ttggatgtagaatcaggtataatgcaaaacaagagtgataaaaattacagaaaactcagg
agagctttgtgcaaaggctatggaaaccagttagctgagcggatgattcatcacaatggc
tttcatacgcttggttacagatcacaacttgtgcaggtccatccttcctctgttctagaa
gctgatgaagatggtcaattgccggactatgtcgtgtatcatgaactcatcagtacaagt
cgcccatttatgagaaatgtttgtgctgttgaaatctcatgggtccaaacgatcttgcgg
aaactagagaagatgaacattcacaagttgagcagtggcggttctgacactttagagagc
catgagatcgcaaaggaagggaatttaacattgcctgtagaaagggccaataccgacaag
aaatctgattccacagatagtaaaattcaggcagctcgggaaagatatcttgctagaaaa
gcaaagaagtaa
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