Zingiber officinale (ginger): 122052412
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Entry
122052412 CDS
T08725
Name
(RefSeq) transport inhibitor response 1-like protein Os05g0150500
KO
K14485
transport inhibitor response 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
122052412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
zof04121
]
122052412
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
122052412
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
DUF7885
LRR_At5g56370
F-box-like
LRR_4
F-box
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
122052412
NCBI-ProteinID:
XP_042469842
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Position
3A:127700929..127735307
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AA seq
580 aa
AA seq
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MDRAFSWAASFPDEVWEHTFSFLPTGADRNAVALVCRSWHRIERLSRRKIFVGNCYAVAP
ATAVRRFPEVRSATIKGKPHFADFNLVPADWGGGAGTWIQSMAEGWPLLEELRLKRMVVS
DDCLELVARSFKNFRVLSLVSCEGFSTAGLAAIAANCRNLKALDLHENEVEENCINWISH
FPESFTSLVTLNISCLDGEMNVSILERLISRCPNLKTLRLNHVTPLEKLVGLLHVAPQLV
DLGIGMLIGEGHPGLFSKLESAFAHLKHLKNLSGIWEAGPLYFPAIYSICEGLTALHLCD
SGIQTPELSKVVSRCKNLQQLWAMDLIEDDGLIAVASSCKLLRELRIFPSDPHGLAQPVS
LTEYGLIAVSSGCVMLESILYFCRQMTNSALLSIANNRPNLTCFRLCIIEPCTPDYITLE
PLDAGFGAIVESCKDLRRLSISGLLTDHVFKTIGASANHLEMLSVAFAGNSDAGLHYILS
GCKKLRKLEIRDCPFGDKALLDNADKLETMRSLWMSSCSVSLGACRLLAKKMPRLNVEVI
DENGGGSLESWSDDCLVEKLYIYRTITGPRTDAPPFVLTV
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atggacagggccttctcttgggcggcctccttccccgacgaggtgtgggagcacactttc
tctttcctccctactggcgccgaccgcaatgccgttgccctggtctgccgctcctggcac
cggatagaacggctgtcgaggcggaagatcttcgtggggaactgctacgcggtggctccg
gcaacggcggtgcggcgattcccggaggtcaggtcggcgaccatcaaggggaagccgcat
ttcgcggatttcaacctagtgcccgccgactggggcggcggggcggggacgtggatccag
tcgatggctgaggggtggccgcttctcgaggagcttcgcctcaagagaatggtggtctct
gatgattgcctcgagcttgttgcccggtcctttaagaactttagggttctgtcactagtc
tcctgcgaagggttcagcactgccgggctggccgccattgcggccaactgcaggaatctg
aaggcacttgatctgcatgaaaatgaagtggaggagaattgtataaactggatatctcat
tttccagaatcctttacttccctggttactcttaacatttcatgcctggatggtgagatg
aatgtatctattcttgagcgccttattagcagatgtcccaatctcaaaacccttagactc
aatcatgtcactcctctagaaaaacttgtcggccttctacacgtggctccacagctggta
gaccttggaattggcatgctcataggagaaggtcatccaggacttttctccaagcttgaa
tctgcttttgctcacttaaaacatctgaagaacctatctggtatatgggaagctggacca
ttatacttcccagcaatatattcaatttgtgaaggtcttacagcactgcacctctgtgat
tctggcatacaaacaccggagctctcaaaagtggttagccggtgtaaaaatcttcaacag
ctatgggctatggacttaatcgaggatgatgggcttattgctgtggcatcatcttgcaaa
ctcctccgagaattgcgaatatttccttctgatccacatggtttggcgcaacctgtctct
ctcacagaatatggccttattgctgtctcttctggttgcgttatgcttgagtctattctc
tatttttgccggcaaatgactaattctgccctccttagtattgctaataatcgccccaat
ctcacatgcttccggctctgcatcatcgagccttgcacccctgattatattactctagaa
cctctagatgctggctttggggctattgttgaatcctgcaaggacctccgacgtctctcc
atatctggtcttcttactgatcatgtgttcaaaaccattggggcttcagcaaatcatctt
gagatgctctctgttgcttttgctggtaatagtgatgcaggtcttcattacattctatct
ggttgtaagaaattacgcaagctggaaattagggactgcccatttggggataaggcactg
ttggacaatgcagataaactggagacaatgcgatccctttggatgtcatcatgctctgtg
tcactgggggcatgcagattattagctaagaagatgccacggcttaacgtggaggttatt
gatgagaatggaggagggtcgttggagtcatggtctgatgattgccttgtggaaaaactt
tacatttacagaactattactggcccgagaactgatgccccaccttttgttttgactgtt
taa
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