KEGG   Zingiber officinale (ginger): 122052457
Entry
122052457         CDS       T08725                                 
Name
(RefSeq) cullin-4-like
  KO
K10609  cullin 4
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03420  Nucleotide excision repair
zof04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    122052457
  09124 Replication and repair
   03420 Nucleotide excision repair
    122052457
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:zof04121]
    122052457
   03400 DNA repair and recombination proteins [BR:zof03400]
    122052457
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:zof04147]
    122052457
Ubiquitin system [BR:zof04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     122052457
DNA repair and recombination proteins [BR:zof03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      122052457
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      122052457
Exosome [BR:zof04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   122052457
SSDB
Motif
Pfam: Cullin Cullin_Nedd8
Other DBs
NCBI-GeneID: 122052457
NCBI-ProteinID: XP_042469924
LinkDB
Position
3A:complement(131663665..131712690)
AA seq 841 aa
MTQHKRPFSGSRSSDGGGGGTTTNSNHSIGATCSTTPVSPDCSNPMKKAKSQQVAACSLD
QEKNGLQRHFGTDVPPRPAEEEDSILVDQEELKTGASSPVSIMGVASNLSRKKATPPQPP
TTKKLVIKSFKIKPSLPTNFEEDTWATLKSAITSIFLKKPDPCDREKLYQAVSNLCLHKM
EWSLYQRIKEECEMHISMALSSLVGQSPDLVVFLSLAEKCWQDFCDQMLTIRGIALVLDR
TYVMQNPNVCSLWDMGLLLFRKHLTSSQEIEHKVVTGLLRLIEKERQGEAIDRTILSHLL
KMFTALGIYMDSFEKPFLQGTSEFYASEGVKYMQLSDVPDYLKHVDLRLHEEHERCVLYL
DASTRKPLVATAEKQLLEHHTSAILDKGFTLLMEANRIDDLRRMYTLFQRVNALELIKQS
LSSYIRGTGQAIIVDEEKDKDLVSYLLEFKASLDKILEESFFKNEAFSNTIKDSFEHLIN
LRQNRPAELIAKFVDEKLRAGNKGTSEEELESILDKVLVLFRFIQGKDVFEAFYKKDLAK
RLLLGKSASIDAEKSMITKLKTECGSQFTNKLEGMFKDIELSKEINDSFKQSSQARTKLP
TGIEMSVHVLTTGYWPTYPPMDIRLPHELNVYQDIFKEFYLSKYHGRRLMWQNSLGHCVL
KAEFPKGKKELSVSLFQTVVLMLFNDTQKLNFQDIKDSTGIDGKELRRTLQSLACGKVRV
LQKIPKGREIEDEDSFVFNEEFNAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDA
AIVRIMKTRKILSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNSQIYNYL
A
NT seq 2526 nt   +upstreamnt  +downstreamnt
atgactcaacacaagaggcctttttctggcagcagaagcagcgacggcggcggcggcgga
accaccacgaacagcaaccacagtatcggagcaacctgcagcaccaccccggtttctccc
gactgctctaaccccatgaagaaggctaaatcccaacaggtcgcagcctgttccttggac
caggagaagaacggcctccaacgccactttggcaccgacgtgcctccacgacctgcggag
gaggaagactcaattctcgtagaccaggaggagctcaaaacgggggcttcatcccctgtt
tctatcatgggagtcgcttccaatctatctaggaagaaggctacacctccccagccgccg
actaccaagaagctcgtcattaagtcattcaaaattaaaccttcacttcccacaaatttt
gaggaggacacatgggcaacattgaagtctgctattacttctatatttttgaagaaacca
gatccctgcgaccgtgaaaaactctatcaggctgtcagcaatctttgcttgcataagatg
gaatggagcctttaccaacgaataaaggaggaatgtgaaatgcacatttctatggcattg
tcatcattggtcggtcaaagtccagacttagtggtttttttgtcattggcagagaaatgc
tggcaggacttctgtgaccagatgttgactatacgtggcattgctttagtacttgataga
acatatgttatgcaaaatccaaatgtctgctcattgtgggacatgggtttgctgctgttc
aggaagcatctcacttcatctcaggaaatagagcacaaagttgtcacaggacttctgagg
ttgattgaaaaggaaaggcaaggtgaagctattgataggactatcctaagtcatctttta
aagatgtttactgctctaggaatttacatggacagctttgagaaaccatttcttcaaggc
acttctgaattttatgcctctgaaggtgtgaaatatatgcaactgtcagatgttccagat
tatttgaaacacgttgatttgaggttacatgaggagcatgaaagatgtgtgttatacttg
gatgcaagtacgaggaagccccttgtggcaactgcagaaaagcaacttcttgaacaccat
acttctgcaattcttgacaagggattcacgttgcttatggaagcaaatcgtattgatgat
cttcggaggatgtatacactatttcagagggttaatgcactcgaattaataaagcaatct
cttagttcatatattcgcggtactgggcaagctattatcgtggatgaagagaaagataaa
gatctggtttcctacctcttagagtttaaagcatctctagacaagatattggaagaaagc
tttttcaaaaatgaagctttctctaataccataaaggattcatttgaacatctgattaat
ctgcgtcagaatagaccagctgaattgattgccaagtttgtggatgagaagcttcgtgct
ggcaacaagggtacatctgaagaagagttagagagtatacttgacaaagttttggtgctg
tttagatttatacaaggaaaagatgtatttgaggcattttacaagaaagaccttgcaaaa
agattattgttgggaaagagtgcatcaattgatgctgagaagtcaatgatcacaaaactt
aaaactgagtgtggcagtcaatttacaaataaattggagggaatgtttaaggatattgag
ttatctaaagaaataaatgactcctttaaacagtcatcccaagctaggacaaagcttcca
actggtattgaaatgagtgttcatgtcctgacaaccgggtattggcccacatatccaccc
atggatattcggcttcctcatgagttaaatgtctatcaggacatattcaaagagttctat
ttgagtaagtaccatggtaggcgtttaatgtggcagaattccttaggccactgtgtcctg
aaagcagaatttccaaaagggaaaaaagaattgtcagtttcattgttccagacagttgtt
ctcatgcttttcaatgacactcaaaagctgaattttcaagacattaaagattctacaggc
attgatggtaaagagttgaggaggacattacaatcattagcatgtggcaaagttcgagtg
ctacagaagatcccaaaaggaagagagatcgaagatgaggattcttttgtgttcaatgaa
gaatttaatgctccattatatcgcataaaggtaaatgcaatccaaatgaaggagacagtg
gaggagaacacaagcaccaccgaaagagtattccaagaccgtcagtatcaggttgatgca
gctattgttcgcattatgaagacaaggaaaatacttagtcacacattgctaattactgaa
ctctttcagcagcttaagtttccgataaagcctgcggatttgaagaagagaatagaaagc
cttatcgacagggaatacttggagagggacaagaacaattcccagatttacaactacctg
gcgtga

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