Zingiber officinale (ginger): 122052672
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Entry
122052672 CDS
T08725
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
KO
K14829
pre-rRNA-processing protein IPI3
Organism
zof
Zingiber officinale (ginger)
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
122052672
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
122052672
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
WDR55
Beta-prop_TEP1_C
Beta-prop_TEP1_2nd
Beta-prop_EML
NBCH_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_DCAF4
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_IP5PC_F
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
WDR54
Beta-prop_IFT122_1st
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
122052672
NCBI-ProteinID:
XP_042470262
LinkDB
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Position
3A:145884368..145888440
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AA seq
437 aa
AA seq
DB search
MEVVIASSAVDAGIGCWELHSGAERHQYRSCSSAPHGLLSVSGRFVFLAASQLRDAPSAT
SAPIFFWSWDKPQVEVRSFPAEPIGPLISNAEGTYIIGGGSSGSIYLWEVFTGKLLKKWH
AHYRSVNCLTLGKDDESLLISGSEDGSVKVWSLIMLFDDIAMASAANHYIYSFSEHSLGV
TDIVSGHGLSNSIIISSSQDRTCKVWSLSKGELLRNILFPSVIDAIAMDPGEHVFYAGGR
DGKIYIAALNAEGNPNSPYGVFILDTLYDQSKGITSLALSKDGFSLVSGSEDGFVRIWNT
ITKQFTRVFKHGKGPINNVVIARQSPLCSSALANKKHSTLPLPPPLSKYTDSADGQVKTT
AVTMVESPLHGHQNTRFLSADVMEKLIQELQNRNTSSAAEMELEKLRLQYARSVHLIEQQ
KKLYEDMQSVYVSELLD
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggaagtggtgatcgcctcgtctgcggtggatgcgggaatcggttgttgggaactccat
tctggcgccgaacgacatcagtaccgctcatgctcctccgctccgcatggtcttctctcc
gtttctggtcgcttcgtattcctagctgcctcgcaactccgagacgcaccctctgcaact
tctgcccctatattcttttggtcctgggataagcctcaggttgaagttagaagctttcct
gctgagccaattggaccacttatttccaatgctgaaggcacttacattattggaggagga
tcatcgggaagtatttatctgtgggaggtttttacagggaaattgctcaagaagtggcat
gctcactaccgctctgttaactgtctcactctagggaaggacgacgaatccctgctaata
tcagggtctgaggatggctctgtcaaagtttggtctcttataatgttgtttgatgatatt
gcaatggcttctgctgccaatcattatatatatagcttcagtgagcattctctaggtgtc
actgacattgtttcggggcatgggttaagcaattccattatcatctcatcttcacaggat
cgtacatgcaaggtatggagtttgtcgaagggtgaactattgaggaacatcttatttcct
tcagtaattgatgctattgcaatggatcctggggagcatgtcttttatgctggtggaaga
gatggcaaaatatatattgcagctctaaatgctgaaggcaaccccaatagcccttatggg
gtgttcatccttgataccttatatgatcaaagcaaaggaataacaagcctagctttaagc
aaggatggattctctcttgtgtctggatctgaagatggttttgtgagaatttggaacaca
ataactaagcagtttactcgcgtatttaaacatgggaaaggccctattaataatgtcgtt
atagccagacagtcgccgttatgtagctctgcattggcgaataagaagcattcaacgtta
ccgttgcctcctccgttgagcaagtacacggattctgcagacggacaagttaaaacaacg
gctgtcactatggttgaatctccattgcatggtcatcaaaatactagatttctcagtgcg
gatgtgatggaaaagctaattcaagagctccagaatcgaaatacttcaagtgctgcagag
atggaactggagaaactaagactccaatatgcaagatcggtacatctaatcgagcaacag
aagaaactttacgaggacatgcaatctgtctacgtgagcgagctgttggattga
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