Zingiber officinale (ginger): 122052680
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Entry
122052680 CDS
T08725
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122052680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122052680
03036 Chromosome and associated proteins [BR:
zof03036
]
122052680
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
122052680
Coactivators
SAGA/TFTC/STAGA complex
122052680
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
122052680
STAGA complex
122052680
TFTC complex
122052680
SAGA complex
122052680
SLIK complex
122052680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR36-Utp21_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_Aladin
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_WDR75_1st
Beta-prop_WDR41
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
Tricorn_2nd
LisH_PAC1
Beta-prop_IP5PC_F
WD_LRWD1
Beta-prop_DCAF12
PROPPIN
LisH
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
122052680
NCBI-ProteinID:
XP_042470278
LinkDB
All DBs
Position
3A:146254365..146267915
Genome browser
AA seq
650 aa
AA seq
DB search
MEEEELQKAVLTYLRKKGFTKTELALQEEQQNRLPSHSDLPLSRLENSPGRYKNGYSKLR
SWAHCSLDLYKHELLRVLYPVYIHCFMDLVAEGHMQDAREFFQNFREDHELMHLRDLQKL
EGILSPSHLEEMELARSLRQNKVRIKICEYSYDLLLQYLQKTQSFSILGIVNERINFEVS
PGQPISISDDAEVVALVGSSHDLAKHINQKEVRWGLLEDSVEERLEKGNSDSEKAEDENK
EIEPEENKKRSAGGGKQTAPSKKSKKDKLVAATGKNVRSETSTVAVAPRVKPELTLPVMP
MEVEKMIINDLRNRVQLSSMALPSVCFYTFINSHNGLNCSAISQDGSFVVGGFSDSSLKV
WDMSKIGQSATLGEDQSTFNEHLVGTEEGKSSCTVFHGHSGPIYSATFSPLGDFLLSSSS
DSTIRLWSPKLNANLVCYKGHNYPVWDVQFSPFGHYFASSSHDRTARIWSMDRIQPLRIM
AGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQTGECARIFIGHRSTILSLAMSPDGRF
MASGDEDGAIMIWDLSSSRCISPLMGHNSCVWSLAFSREGSLLASGSADCTLKLWDVTSS
VKGQKIEESKTSTTNRLRLLRALPTKSTPVYTLQFSRRNLLLAAGALSKC
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggaggagcttcagaaggcggtgctcacgtacctgaggaagaagggtttcacc
aagaccgagcttgctcttcaggaagagcagcagaaccgcctcccttctcactccgatctc
cccttgtccagattggaaaatagtccaggacgatataaaaatggttatagcaagctaaga
tcatgggcccattgttcactggatctatacaagcatgagctccttcgtgtactctatcca
gtatatatccactgcttcatggatctcgtggcagaaggtcatatgcaagatgctcgggaa
tttttccaaaatttccgtgaagatcatgagcttatgcatttaagggatctgcagaaattg
gaaggcatcctttctccctcacatttggaggaaatggagctagctcgttccctgagacag
aacaaagtccgaataaaaatatgtgagtactcctatgatctcctcttacagtaccttcaa
aagacacaatctttttcaatccttgggatagtcaatgaacgcatcaattttgaagtttca
ccaggacagccaatctcaatttctgatgatgcagaagtggtcgctctagttggaagtagt
catgatcttgctaaacacataaaccagaaggaagtacgctgggggttacttgaagattct
gttgaagaacgcctggagaagggaaattcagattctgaaaaggctgaggatgaaaacaag
gagattgaaccagaagagaacaagaaaaggtctgctggcggaggaaagcaaactgctcct
tcaaaaaagtcaaaaaaggacaagcttgttgctgctacagggaaaaatgttcgctcagaa
acaagcactgttgctgtggctccacgtgtaaaaccagagcttacactacccgtaatgccc
atggaagtagaaaaaatgattattaacgatctacggaatcgtgtgcaattgagtagcatg
gcactgccatctgtatgcttctatactttcatcaactcacacaatggattaaattgttca
gctatatctcaagatggatcttttgtggttggcgggttttctgattcatctctaaaggtc
tgggacatgtctaagattggccaatcagcaacacttggagaagatcagtccacgtttaat
gagcatctagtgggaactgaggagggcaaaagttcttgtacagtatttcatggtcactct
ggtcctatctattcagccaccttcagtcctcttggtgattttctgctgtcttcatcatca
gattctacaattcgattatggagccccaagttgaatgcaaatcttgtctgttacaaaggg
cacaattaccctgtatgggatgtgcagtttagtccttttggccattatttcgctagttct
tcacatgatcggacagctagaatttggtcaatggacagaatacaacctctgaggataatg
gctggacatctttctgatgtcgattgtgtacaatggcatgccaattgtaattacattgcg
acgggctcgagtgacaaaactgttagactatgggatgtacaaactggggaatgtgcacgg
attttcattggtcataggagcacaatattgtcattggcaatgtctccagatgggcggttt
atggcttctggtgatgaagatggcgcaatcatgatatgggatctctcaagtagtcgttgt
atctcaccacttatggggcacaattcttgtgtttggtctcttgctttcagtcgtgaaggt
tcgctgcttgcttctggatccgctgactgtacattgaaattatgggatgtcacttccagt
gtcaagggacagaagatagaagagagtaaaactagcaccactaatcgcctacgactattg
agagctctgcctaccaaatccactcctgtatatacattacagttctcaagaaggaacctt
ttgcttgctgctggagcactttcaaagtgctag
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