Zingiber officinale (ginger): 122052691
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Entry
122052691 CDS
T08725
Name
(RefSeq) small nuclear ribonucleoprotein SmD3b-like
KO
K11088
small nuclear ribonucleoprotein D3
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122052691
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122052691
03041 Spliceosome [BR:
zof03041
]
122052691
03032 DNA replication proteins [BR:
zof03032
]
122052691
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
122052691
Spliceosome [BR:
zof03041
]
Complex A
U1 snRNP components
Sm proteins
122052691
U2 snRNP components
122052691
Complex B
U1 snRNP components
122052691
U4/U6.U5 tri-snRNP components
122052691
Complex C
U2 snRNP components
122052691
DNA replication proteins [BR:
zof03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
122052691
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
122052691
NCBI-ProteinID:
XP_042470292
LinkDB
All DBs
Position
3A:146394904..146406338
Genome browser
AA seq
132 aa
AA seq
DB search
MSRSLGIPVKLLHEAAGHIVTVELKSGELYRGNMIECEDNWNCQLESITYTAKDGKVSQL
EHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIRGKGSALGVGRGRAVAMRARAQAAGRGG
PPGRGAVPPIRR
NT seq
399 nt
NT seq
+upstream
nt +downstream
nt
atgagccggagtctggggatccccgtgaagctgcttcacgaggcagcggggcacatcgtc
acggtggagctcaagagcggcgagctgtaccggggcaacatgatcgagtgtgaggacaac
tggaactgccaactcgaaagcatcacatatactgccaaggatgggaaagtatcacagctc
gagcatgttttcatacgagggagcaaagtaaggtttatggtcatccctgatatgcttaag
aatgcaccaatgtttaagcgcttggatgctagaatcagaggcaaaggatctgctcttgga
gttggtcgtggtcgtgctgttgccatgcgtgcaagggcccaagcagctgggcgcggtggc
cctcctggtcgaggagctgttcctccaattagaagatag
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