Zingiber officinale (ginger): 122052735
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Entry
122052735 CDS
T08725
Name
(RefSeq) DNA excision repair protein CSB-like
KO
K10841
DNA excision repair protein ERCC-6
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
122052735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
zof03036
]
122052735
03400 DNA repair and recombination proteins [BR:
zof03400
]
122052735
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
122052735
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
122052735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
AAA_34
Motif
Other DBs
NCBI-GeneID:
122052735
NCBI-ProteinID:
XP_042470348
LinkDB
All DBs
Position
3A:148112112..148121223
Genome browser
AA seq
1195 aa
AA seq
DB search
MEEADEDKLLLSSLGISSANPEDIEREILSQAKCVANYVSEPDESSLQHKPDDETSLSTS
RTRLCNKLRAIEVEIDAVASSIDRIKCITDDGNDTCDQNGDGGDRVEESAVNDVQCSNDL
SLEQALVSDRLRSLKKAKAQLEKEISSFGDCAFDDIEHEKQTDELLGELVRENQKKKKTI
ELSTRPSQRSLKAVSYDEDVDFDAVLDASSSGFMETERDKLVRKGILTPFHKLKGFERRV
QHPGTSTEQDASAECSVENLALTSIAKAAESMSQIASTRPTTKLLDADALPALEPPTVPF
QRLRAPLKHPRSLTEVLDKKKRNLKRLKRPKPDKKWRKQDLSKQKLWSGCASNGDATSDY
EGEMQVEAESMDESCVVLEGGLKIPGAIFSKLFDYQKVGVQWLWELHCQRAGGIIGDEMG
LGKTIQVISFLASLHYSKLYKPSVVVCPVTLLRQWQREVQKWYPDFEVEILHVSAHFPSE
QKTSKSSESDYDSESSIGSDNEKPRIAKPTKRWEDMIDRIVRSESGLLLTTYEQLRIMGR
KLLDIEWGYSILDEGHRIRNPNAEITLICKQLQTVHRIIMTGAPIQNKLAELWSLYDFVF
PGKLGVLPVFETEFAVPITVGGYANATPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAH
LPKKTEHVLFCSLTQEQRSVYRAFLASSEVEQIFDGRRNSLYGIDIMRKICNHPDLLERE
HATGNPDYGNIERSGKMKVVSQVLKVWKEQGHRVLLFTQTQQMLDIFENFLAANGYSYRR
MDGLTPIKQRMSLIDEFNNSEEVFIFILTTKVGGLGTNLTGADRVIIYDPDWNPSTDMQA
RERAWRIGQTRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARDMKDL
FTLQDDQQGNSTETSNIFSQLSEEVNLGGDISNHGKQESPSVGEEENTNQNKGRIDGETS
ILRNLLDANGIHSAVNHDAIMNASDDAKMKLEEQASQVAQRAAQALRESRMLRARESFAV
PTWTGRSGAAGAPSSARSRFGSTFNTQLLSPTKPTEASTSRPNGFSAGAMAGKALSSAEL
LAKIQGTQERAITDALEQDLDLASSSSHQRRNPESSQLTKHSNRLMIVQPEVMIRQLCTF
IQQRGGQSDSASITQHFKDRIQSKDLPLFKNLLKEIATLEKVSGVSRWVLKPEYR
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagccgacgaggataagcttttgctgagtagtttgggcatttcatcggctaat
cctgaagacatcgaacgggaaattctctcacaggcaaaatgtgttgccaattatgtcagt
gagcctgatgaaagttctctacaacacaagcctgatgatgaaacttcattatcaacttca
cgaactagactttgcaataaattacgggcaattgaagttgaaattgatgcagtagcttct
agcattgataggattaaatgcattacagatgatggaaatgacacttgtgatcaaaatggt
gatggtggtgacagagttgaggagagtgctgtaaatgatgttcaatgttccaatgacttg
agtttggaacaggctcttgtgtcagatcgtttaagaagcctcaagaaggcaaaggcacaa
ctggaaaaggaaatctcttcatttggtgattgtgcttttgatgatatcgagcatgaaaaa
cagactgacgagctgcttggagagttagttagagaaaatcaaaagaaaaagaaaacaatt
gaactgtcaactaggccttcacaacgatctctaaaggctgtttcttatgatgaagatgtt
gattttgatgccgtccttgatgcatcatcttctgggtttatggaaactgagagggataaa
ttggttcgaaagggtatattgaccccttttcacaagcttaaaggatttgaacgtcgtgtt
caacatccaggaacctcaactgagcaagatgcctctgcggaatgctcagttgaaaatctt
gcattgaccagcattgcaaaagctgcggagtcaatgtcccagattgcttcaactcgccca
acaactaaattacttgatgctgatgctttacctgcacttgaaccacctacagttcctttt
caaaggcttagagcacctctaaaacacccacggtctttaacagaggtattggataagaaa
aaaagaaacctcaaacggctaaaacggcctaaacctgacaagaaatggagaaaacaagat
ttatcaaagcagaagttatggagtggatgtgcttcaaatggagatgcaacttctgattat
gagggtgagatgcaagttgaggcagaaagtatggatgaatcatgtgttgtccttgaagga
ggcttaaaaattcctggtgctattttctcaaaactttttgactaccagaaagtgggagtt
caatggttgtgggaattacattgccaaagagctggaggcattataggagatgagatgggc
ctgggaaaaactatccaggtcatatcatttcttgcttctcttcattatagtaaattgtat
aaaccgagtgttgttgtttgccctgtaacccttcttagacaatggcaaagggaggttcag
aaatggtaccctgattttgaagttgagatacttcatgtttctgcacactttcctagtgaa
cagaaaacatctaaatctagcgaaagtgattatgatagtgaatcttcgataggcagtgac
aatgaaaaacctcgtattgcaaaaccaacaaaaagatgggaagacatgattgaccggatt
gtgagatcagaatcaggtttgcttctaactacatatgaacaattacgcattatgggcagg
aagttgctcgacatagaatggggatattccattttggatgagggccaccgaataagaaat
ccaaatgctgaaataactttaatttgcaaacaactacaaactgtgcatcgcataatcatg
actggtgcaccaattcagaacaaactagcagaactgtggtctctttatgattttgtgttc
cctggaaaactaggtgttctacctgtttttgagacggagtttgcagttccaattacagtg
ggtggatatgctaatgccacaccactgcaagtatcaactgcatatagatgtgcagttgtt
ctccgtgatttgatcatgccgtaccttctaaggcgtatgaaagctgatgtgaatgctcac
cttccaaagaaaacagagcatgtccttttctgcagcctcacacaagagcaacgttctgtt
tatcgagcatttcttgctagttctgaggtggagcaaatttttgatggaagaagaaactca
ttgtatggaatagatattatgcgaaaaatctgcaatcatcctgatttattagaaagagaa
catgctactggcaatccagattatgggaatatagaacgtagtggaaagatgaaagtcgtt
tcacaagttcttaaggtctggaaggaacaagggcatcgggttcttctttttacacaaaca
caacaaatgctagacattttcgagaactttctagctgcaaatggttatagctatcgcaga
atggatgggcttacccctataaagcaaaggatgtcacttatagatgaatttaataactct
gaggaggtcttcatcttcattttaactactaaagttggtggcttggggacaaatttaaca
ggtgctgatagggtcatcatatatgatcctgattggaatccttcaaccgatatgcaggca
agagaaagagcttggcgaataggacaaacccgcgatgtaacagtttatagattaattact
cgtggaactatagaggagaaagtatatcataggcagatttacaaacattttcttaccaac
aagattctgaagaatcctcaacaaagacgtttctttaaagccagagacatgaaggatcta
tttaccttgcaagatgatcaacaggggaattctactgagacgtcaaatattttcagtcag
ttatcagaagaagtaaatttaggaggtgacattagcaaccatggaaaacaagaatctccc
tcggttggtgaagaagagaacactaaccaaaataaaggtcgtattgatggggaaacaagt
atattgaggaatcttttggatgctaatggtattcatagcgcagtgaaccatgatgccatt
atgaatgccagtgatgatgctaagatgaagctggaggagcaagcttcccaagtagcacag
agggcagctcaagccttgcgggagtcccggatgcttcgggccagggaaagttttgctgtt
ccaacatggactggaagatctggtgctgctggagcaccatcatctgcccggagccggttt
ggctctacttttaacacacaattgctgagtccaacaaaacctacggaagcatctactagc
cgaccaaatggtttctcagctggagctatggctggcaaggcactatcatcagctgaactg
ttagctaagatccagggaactcaagaaagagccatcactgatgcacttgaacaagatttg
gatttggcatcttcttccagtcaccaaagaagaaatccagaaagcagtcagttgacaaag
cattccaacagactgatgatagtgcagcccgaggtgatgatcaggcagctctgcacattt
attcagcagcgaggtgggcagagcgattctgccagcataacacaacacttcaaagacaga
atacagtcaaaagatttgcctctcttcaaaaatcttctcaaagagattgccactctagaa
aaagtttctggtgtctcaagatgggttttgaaaccagaataccggtag
DBGET
integrated database retrieval system
