Zingiber officinale (ginger): 122052738
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Entry
122052738 CDS
T08725
Name
(RefSeq) DNA excision repair protein CSB-like
KO
K10841
DNA excision repair protein ERCC-6
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
122052738
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
zof03036
]
122052738
03400 DNA repair and recombination proteins [BR:
zof03400
]
122052738
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
122052738
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
122052738
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
AAA_34
Motif
Other DBs
NCBI-GeneID:
122052738
NCBI-ProteinID:
XP_042470353
LinkDB
All DBs
Position
3A:148152003..148161165
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AA seq
1194 aa
AA seq
DB search
MEEGDEDKLLLSSLGISSANPEDIEREILSQAKCVANYVSEPDESSQQHKPDDETSLSTS
RTRLCNKLRAIEVEIDAVASSIDRIKCVTDDGNDTCDQNGDGGDRVEESAVNDVQCSNAL
SLEQALVSDRLRSLKKAKAQLEKEISSYGDCAFDDIEHEKQTDELLGELVRENQKKKKTI
KLSTRPSQRSLKAVSYDEDVDFDAALDASSSGFMETERDKLVRKGILTPFHKLKGFERCV
QHPGTSTEQDASAECSVENLALTSIAKAAESMSQIASTRPTTKLLDADALPALEPPTVPF
QRLRAPLKHPRSLTEELDKKKRNLKRLKRPKPDKKWRKQDLSKQKLWSGCASNGDATSDY
EGEMQVEAESMDESCVVLEGGLKIPGAIFSKLFDYQKVGVQWLWELHCQRAGGIIGDEMG
LGKTIQVISFLASLHYSKLYKPSVVVCPVTLLRQWQREVQKWYPDFEVEILHVSAHFPSE
QKTSKSSESDYDSESSIGSDNEKPRIAKPTKRWEDMIDRIVRSESGLLLTTYEQLRIMDR
KLLDIEWGYSILDEGHRIRNPNAEITLICKQLQTVHRIIMTGAPIQNKLAELWSLYDFVF
PGKLGVLPVFETEFAVPITVGGYANATPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAH
LPKKTEHVLFCSLTQEQRSVYRAFLASSEVEQIFDGRRNSLYGIDIMRKICNHPDLLERE
HATGNPDYGNIERSGKMKVVSQVLKVWKEQGHRVLLFTQTQQMLDIFENFLAANGYSYRR
MDGLTPIKQRMSLIDEFNNSEEVFIFILTTKVGGLGTNLTGADRVIIYDPDWNPSTDMQA
RERAWRIGQTRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARDMKDL
FTLQDDQQGNSTETSNIFNQLSEVNLGGDISNHGKQESPSVGEEENTNQNKGRIDGETSI
LRNLLDANGIHSAVNHDAIMNASDDAKMKLEEQASQVAQRAARALRESRMLRARESFAVP
TWTGRSGAAGAPSSVRSRFGSTFNTQLLSPTKPTEASTSRPNGFSAGAMAGKALSSAELL
AKIQGTQERAITDALEQDLDLASSSSHQRRNPESSQLTKHSNRLMIVQPEVMIRQLCTFI
QQRGGQSDSASITQHFKDRIQSKDLPLFKNLLKEIATLEKVSGVSRWVLKPEYR
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaggcgacgaggataagcttttgctgagcagtttgggcatttcatcggctaat
cctgaagacatcgaacgggaaattctctcacaggcaaaatgtgttgccaattatgtcagc
gagcctgatgaaagttctcaacaacacaagcctgatgatgaaacttcattatcaacttca
cgaactagactttgcaataaattacgggcaattgaagttgaaattgatgcagtagcttct
agcattgataggattaaatgcgttacagatgatggaaatgacacttgtgatcaaaatggt
gatggtggtgacagagttgaggagagtgccgtaaatgatgttcaatgttctaatgccttg
agtttggaacaggctcttgtgtcagatcgtttaagaagcctcaagaaggcaaaggcacaa
ctggaaaaagaaatctcttcatatggtgattgtgcttttgatgatatcgagcatgaaaaa
cagactgacgagctgcttggagagttagttagagaaaatcaaaagaaaaagaagacaatt
aaactgtcaactaggccttcacaacgatctctaaaggctgtttcttatgatgaagatgtt
gattttgatgccgcccttgatgcatcatcttctgggtttatggaaactgagagggataaa
ttggttcgaaagggtatattgaccccttttcacaagcttaaaggatttgaacgttgtgtt
caacatccaggaacctcaactgagcaagacgcctctgcggaatgctcagttgaaaatctt
gcattgaccagcattgcaaaagctgcggagtcaatgtcccagattgcttcaactcgccca
acaactaaattacttgatgctgatgctttacctgcacttgaaccgcctacagttcctttt
caaaggcttagagcacctctaaaacacccacggtctttaacagaggaattggataagaaa
aaaagaaacctcaaacggctaaaacggcctaaacctgacaagaaatggagaaaacaagat
ttatcaaagcagaagttatggagtggatgtgcttcaaatggagatgcaacttctgattat
gagggtgagatgcaagttgaggcagaaagtatggatgaatcatgtgttgtccttgaagga
ggcttaaaaattcctggtgctattttctcaaaactttttgactaccagaaagtgggagtt
caatggttgtgggaattacattgccaaagagctggaggcattataggagatgagatgggc
ctgggaaaaactatccaggtcatatcatttcttgcttctcttcattatagtaaattgtat
aaaccgagtgttgttgtttgccctgtaacccttcttagacaatggcaaagggaggttcag
aaatggtaccctgattttgaagttgagatacttcatgtttctgcacactttcctagtgaa
cagaaaacatctaaatctagcgaaagtgattatgatagtgaatcttcgataggcagtgac
aatgaaaaacctcgtattgcaaaaccaacaaaaagatgggaagacatgattgaccggatt
gtgagatcagaatcaggtttgcttctaactacatatgaacaattacgcattatggacagg
aagttgctcgacatagaatggggatattccattttggatgagggccaccgaataagaaat
ccaaatgctgaaataactttaatttgcaaacaactacaaactgtgcatcgcataatcatg
actggtgcaccaattcagaacaaactagcagaactgtggtctctttatgattttgtgttc
cctggaaaactaggtgttctacctgtttttgagacggagtttgcagttccaattacagtg
ggtggatatgctaatgccacaccactgcaagtatcaactgcatatagatgtgcagttgtt
ctccgtgatttgatcatgccataccttctaaggcgtatgaaagctgatgtgaatgctcac
cttccaaagaaaacagagcatgtccttttctgcagcctcacacaagagcaacgttctgtt
tatcgagcatttcttgcaagttctgaggtggagcaaatttttgatggaagaagaaactca
ttgtatggaatagatattatgcgaaaaatctgcaatcatcctgatttattagaaagagaa
catgctactggcaatccagattatgggaatatagaacgtagtggaaagatgaaagtcgtt
tcacaagttcttaaggtctggaaggaacaagggcatcgggttcttctttttacacaaaca
caacaaatgctagacattttcgagaactttctagctgcaaatggttatagctatcgcaga
atggatgggcttacccctataaagcaaaggatgtcacttatagatgaatttaataactct
gaggaggtcttcatcttcattttaactactaaagttggtggcttggggacaaatttaaca
ggtgctgatagggttatcatatatgatcctgattggaatccttcaaccgatatgcaggca
agagaaagagcttggcgaataggacaaacccgcgatgtaacagtttatagattaattact
cgtggaactatagaggagaaagtatatcataggcagatttacaaacattttcttaccaac
aagattctgaagaatcctcaacaaagacgtttctttaaagccagagacatgaaggatcta
tttaccttgcaagatgatcaacaggggaattctactgagacatcaaatattttcaatcag
ttatcagaagtaaatttaggaggtgacattagcaaccatggaaaacaagaatctccctcg
gttggtgaagaagagaacactaaccaaaataaaggtcgtattgatggggaaacaagtata
ttgaggaatcttttggatgctaatggtattcatagcgcagtgaaccatgatgccattatg
aatgccagtgatgatgctaagatgaagctggaggagcaagcttcccaagtagcacagagg
gcagctcgagccttgcgggagtcccggatgcttcgggccagggaaagttttgctgttcca
acatggactggaagatctggtgctgctggagcaccatcatctgtccggagccgatttggc
tctacttttaacacacaattgctgagtccaacaaagcctacggaagcatctactagccga
ccaaatggtttctcagctggagctatggctggcaaggcactatcatcagctgaactgtta
gctaagatccagggaactcaagaaagagccatcactgatgcacttgaacaagatttggat
ttggcatcttcttccagtcaccaaagaagaaatccagaaagcagtcagttgacaaagcat
tccaacagactgatgatagtgcagcccgaggtgatgatcaggcagctctgcacatttatt
cagcagcgaggtgggcagagcgattctgccagcataacacaacacttcaaagacagaata
cagtcaaaagatttgcctctcttcaaaaatcttctcaaagagattgccactctagaaaaa
gtttctggtgtctcaagatgggttttgaaaccagaataccggtag
DBGET
integrated database retrieval system
