Zingiber officinale (ginger): 122052739
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Entry
122052739 CDS
T08725
Name
(RefSeq) formamidopyrimidine-DNA glycosylase-like
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
122052739
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
zof03400
]
122052739
Enzymes [BR:
zof01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
122052739
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
122052739
DNA repair and recombination proteins [BR:
zof03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
122052739
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
Fpg-like_C
NFACT_N
Ribosomal_S13
Motif
Other DBs
NCBI-GeneID:
122052739
NCBI-ProteinID:
XP_042470358
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All DBs
Position
1B:complement(23007216..23015007)
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AA seq
372 aa
AA seq
DB search
MPELPEVEVARRAIEEHYVGKRIVQCSVADDPKVIDGVTPSDLESALVGKTIVAALRKGK
NLWLRLDSPPFPTFQFGMAGAIYIKGVTLTKYKRSAVSDADEWPSKYSKVLLKLDDGLEL
SFTDKRRFARVRLLEDPESVAPISELGPDALLELMPIDAFMESLSKKKIAIKALLLDQSY
ISGIGNWIADEVLYQAQIHPNQIASSLSRESCKALHNCIKEVIEKALEVGADSSKFSQDW
IFHSREKKPGNAFVAGKKIEFITVGGRTSAYVPELQKLTANQLEEASYKKSAKTRSIKKV
DKEESTSEKEESNEISKKTKDPKRQAKKTGETKNTSSSGKGKTQKQDESALSSLKKRKES
NQAETRQKKAKK
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgccggagttaccggaggtggaggtggcgcggagggcgattgaggagcattatgtaggg
aagaggatcgtccaatgctcggtcgccgacgaccctaaggtcattgacggcgtcacgccc
tcggatctagagtccgccctcgttggcaagaccatcgtagcagccctccgcaagggaaag
aacctatggctccgcctcgattccccgcccttccctacattccagttcggtatggcgggg
gctatctacattaaaggcgtgacgctgacaaagtataaaaggtctgcggtgagcgatgcg
gatgaatggccttcaaaatactctaaagtgttgcttaaacttgatgatggattggagctt
tcttttaccgataagagacgttttgcccgggttcgcttacttgaagatccagaatcagta
gctcctatttctgaacttggcccagatgcattgttagagcttatgccaatcgatgccttt
atggaatcactgagcaaaaagaagattgcaataaaggctcttttacttgatcagagttac
atttcaggcattggcaattggatagcagatgaagttctttaccaggcacagattcatcct
aatcaaattgcttcaagcttgtcaagagagagttgcaaggcattgcataattgcatcaag
gaggttattgagaaggccctggaagttggagctgatagtagtaaattctcccaggactgg
atttttcattctcgcgagaagaaacctgggaatgctttcgtggctgggaagaaaatagaa
ttcatcacagtaggtggtagaacttcagcatatgtaccagagttacagaagttaactgca
aatcagttggaagaggcctcttacaagaaatcagccaagacaaggtccatcaaaaaggtt
gacaaggaagaatcaacgagtgaaaaagaggagtccaacgaaatctcaaagaaaacgaaa
gatcccaagaggcaggcaaagaaaactggtgaaaccaaaaacactagtagttcaggcaaa
gggaagacacagaaacaagatgaatctgcactcagctcgctgaagaagagaaaagaatcc
aatcaagctgaaacacgacagaagaaagcaaagaagtaa
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