Zingiber officinale (ginger): 122052974
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Entry
122052974 CDS
T08725
Name
(RefSeq) regulator of nonsense transcripts UPF2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03013
Nucleocytoplasmic transport
zof03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122052974
03015 mRNA surveillance pathway
122052974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122052974
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122052974
mRNA cycle factors
P-body specific factors
122052974
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
DUF3450
Motif
Other DBs
NCBI-GeneID:
122052974
NCBI-ProteinID:
XP_042470696
LinkDB
All DBs
Position
3A:156638315..156662644
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AA seq
1191 aa
AA seq
DB search
MEHTEDECRMVSDHQGKQDDEESLARLEEHRKSIDAKMTLRHSNLNPERPDSGFLRTLDS
SIKRNTAVTKKLRQINDEQREALLDELRGVNMSKFVSEAVTAICEAKLRASDIQAAVQVC
SLLHQRYNDFAPSLIQGLLKIFFPGKTGDDLDADRNSRAMKKRSTLKLLVELYFVGVVDD
CSILLNIIKDLTALDHLKDRETTQTNLSLLTSFTRQGRFFLGLQLAGQEIYDEFFAVLNV
TADQKKFFKKALHAYYDAVTELLLSEHNSLRLMELENAKVLNAKGELSDENTASYEKLRK
SFDQLFRGVSSLAEALDVQPPVMPDDGHSTRVTTGIDAASSTSVKEASILEPVWDDEDTR
AFYESLPDLRAFVPAVLLGEAEPKLNDQQLKAHDQQSENTLELDADTQDASETCVDPESS
PKCKTEVKGKDKDEKDKEKMRDSDKEKPKDDTEKKDGDKDKIKGLDGTSLDSLLQRLPGC
VSRDLIDQLTVEFCYLNSKTNRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVPPM
LLSMLEEEFNFLINKKDQTNIETKIKNIRFIGELSKFKIASAGLVFTCLKACLDDFTHHN
IDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPE
RSARVTKVRPPLHQYIRKLIFSDLDKSTVEHVLRQLRKLPWSECEPYILKCFLKVHKGKY
SQVHLIAVLTGGLGRYHDEFVVALIDEVLEEIRLGLELNDYEMQQRRLAHMRLLGELYNY
EHIDSSVVFETLYLIICYGYGSSEQDTLDPPEDCFRIRLIVTLLQTCGHYFDRGSSKRKL
DRFLIYFQQYVLSKGPIPFDIEFDIQDMFAELRPDMTRYSTIEEVNIALVELEEHERTFS
ADKIYSEKHSDGESQKGQSQSVSTINVNGQGTTNGIENGRVHDAAGDSDSYSDNGSIYHD
GHEDEEEPMYEDKSDDGSDGDEDDDEDDGAVGSDEEDNVHVRQKLVQVDPNEEEDFDREL
KTLMQESLESRKLDIRARPTINMIIPMNVFDGSKDPRFVEGESGEDTVEEDGGGGPNKVR
VKVLMKRGNKQQTKQMYVPHDCTLVQSTKQKEAAELEEKQHLKKRILEYNEREEEELSGA
SLQAGNWMQSGNSSGNRTAVRGNWDGIRMGLRPRQHPHPSSGYYHSHGRRR
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atggagcacactgaagatgagtgtcgtatggtcagtgatcaccaggggaagcaagatgat
gaggaaagtcttgcacgccttgaggaacatcgaaaatcaattgatgcaaaaatgacactc
cgccatagtaatttgaatcctgaaagaccagattctggattcctcaggacattagactcc
agtatcaaacgtaatactgctgttaccaaaaagcttaggcagataaatgatgagcaaaga
gaagccctattggatgagctgagaggtgtcaacatgagcaagtttgttagtgaagctgtt
actgctatttgtgaagccaagcttcgagcttcagatattcaagcagcagtgcaggtttgc
tctttgcttcatcaaagatacaatgactttgcaccttccctaattcagggcctgcttaaa
attttctttcctggaaaaaccggtgatgatttagatgctgataggaattcaagggctatg
aagaaaaggagtactctgaaacttcttgttgaactttattttgttggggtggttgatgat
tgcagcattcttctaaacattataaaggatcttactgctctggaccatttgaaggatagg
gaaacaacacagactaatttgtcacttctcacaagttttacccgacaaggaagatttttt
ttgggccttcaactagctggacaagaaatttatgatgagttttttgctgtccttaatgtc
actgcagatcagaaaaagtttttcaagaaagcattacatgcatattatgatgccgtaact
gaattacttctgtctgagcataattcacttcggctaatggaacttgagaatgcaaaggtc
ttgaatgctaaaggggagcttagtgacgaaaatactgcatcatacgagaaactcaggaag
tcttttgatcaattattccgtggtgtctcttctttagctgaagcacttgatgtgcaacct
cctgtaatgccagatgatggtcattcaactcgagttaccacaggaattgatgcagcatct
tccacttcagtgaaagaggcatctattcttgaacctgtatgggatgatgaagatacaagg
gcattttatgagtcattacctgacctcagagcatttgttcctgctgttttacttggagaa
gctgaaccaaagttgaatgaccaacaactgaaagcacatgatcagcaaagtgaaaataca
ttggagctagacgctgatacacaagatgcttctgagacttgtgttgatccagaatcttca
ccaaagtgtaaaacagaagtaaagggaaaggataaagatgaaaaagataaggaaaaaatg
agagattctgataaagaaaaacctaaagatgacactgaaaagaaagacggggacaaggat
aagataaaaggtcttgatggaacgagtttggatagtctgttacagagacttccgggttgt
gtaagccgtgatcttattgatcagctgacggtagagttttgttacttgaattctaagaca
aatagaaagaaattagttcgagcactcttcaatgtaccaaggacttccttagagttgttg
ccatactattctcgaatggtggcaacattgtcaacatgtatgaaggatgtgccaccaatg
ctattgtcaatgctagaagaggagttcaactttctcataaataagaaggatcaaaccaat
atcgagacaaagataaagaacattaggtttattggagaactaagcaagttcaaaattgca
tctgcaggtcttgtatttacttgcttgaaggcctgtcttgatgatttcactcatcataac
attgatgttgcttgcaatcttcttgaaacttgtggtcggtttttgtatcgatcacctgaa
actaccatacgcatggcaaacatgttggagattctgatgcgactgaaaaatgtgaagaat
ttggatccccgtcatagtacattggttgaaaatgcctattacttgtgcaaacctcctgag
cgttctgctcgagttactaaagtccgtcctccattacatcagtatatcagaaaactgatt
ttctcagatcttgacaagtcgacagtggagcatgttctgcgtcagctgcgcaaactacct
tggtctgaatgcgaaccatacatattaaagtgcttcttgaaggttcacaaggggaaatat
agtcaagtacatcttattgctgttctcactggagggcttggtcgctaccatgacgaattt
gtagttgcacttatagatgaggtacttgaggaaattagactgggattagaattgaatgat
tatgagatgcagcagcggcggcttgctcatatgagattgcttggggagctatacaattat
gagcacattgattcctccgtagtgtttgaaacactttacctgattatttgctatggttac
ggatcatcagaacaagatactttggatccaccagaagattgtttccgtatcagattgata
gttacacttcttcagacgtgtggtcactattttgatagaggttcttccaagagaaagctt
gatagattcttgatatattttcaacagtatgttctaagcaaaggtccaataccattcgac
attgagtttgacattcaggacatgtttgcagaattacgacctgatatgactaggtactca
acaattgaggaagttaatattgcactcgttgaacttgaggaacatgagcgaactttctca
gctgataagatctacagtgagaagcactcagatggtgaatctcaaaaaggtcaatctcag
tcagtttcaacaattaatgtcaatggacaaggtacaacaaatggaatagagaatggtagg
gttcatgatgcagcaggggatagtgatagctactctgacaatggtagcatttatcatgat
gggcatgaagacgaggaagaaccaatgtatgaagacaaatcggatgatgggtcggatggt
gatgaggatgatgatgaagatgatggtgcagttggatctgatgaggaagacaatgtccac
gttaggcagaaattggtgcaggtggatcccaatgaagaagaggacttcgaccgtgagttg
aagactctgatgcaggaaagcttggaatcaagaaagctggacataagggctaggcctact
attaatatgataataccaatgaatgtttttgatggttctaaggacccgaggtttgtcgag
ggggagagtggtgaagacactgtagaggaagatggtggtggaggaccaaacaaggtgaga
gttaaagtgctgatgaaaagaggcaacaagcagcaaacaaagcaaatgtatgtcccccat
gactgcactctcgtgcaaagtacaaaacaaaaggaagctgctgagttggaagagaaacaa
catctgaagaagcggattctggaatataatgagagggaagaagaggaactaagtggagca
tcattgcaagctgggaactggatgcaatctgggaacagcagtggtaaccggactgcagtc
cgaggtaattgggatggtatcaggatgggtttgcggccacgacaacatccacatccatct
agtgggtactatcattcgcatggtaggagaagatga
DBGET
integrated database retrieval system
