Zingiber officinale (ginger): 122052983
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Entry
122052983 CDS
T08725
Name
(RefSeq) polyadenylate-binding protein 2-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03015
mRNA surveillance pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122052983
09123 Folding, sorting and degradation
03018 RNA degradation
122052983
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122052983
03041 Spliceosome [BR:
zof03041
]
122052983
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122052983
mRNA cycle factors
Stress granule specific factors
122052983
Spliceosome [BR:
zof03041
]
Complex C
Other components
Complex C specific factors
122052983
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_3
RRM_MARF1
RRM_PARP14_3
RRM_YTH1
Nup35_RRM_2
Cupin_NOL9
BRAP2
Motif
Other DBs
NCBI-GeneID:
122052983
NCBI-ProteinID:
XP_042470708
LinkDB
All DBs
Position
3A:157167495..157178172
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AA seq
648 aa
AA seq
DB search
MAQSTVEQQTSDGEVNNGGGNQIPLSSLYVGDLHPSVTEPQIFEFFSQIGPVISVRLCQD
SDTRRSLGYAYVNYSNPADAAMALDVLNFTLINNKPIRIMYSNRDPSIRKSGSANVFIKN
LDKTINNKALHEIFSSFGSILSCKIVTDTFGQSKGYGFVQFDREEAAQSAISKLNGALMN
DKPVYVGPFVRKQERENSADKTKFTNVFVKNLSESTTKEDLENIFGKYGKITSAVVMIEE
DGKSKCFGFVNFDDPDAAALAVQELNGQQFDDKEWYVGKALKKSERDSELREKIEQTATE
TIDKYHGLNLYLKNLDDSIGDDKLVELFSGFGIITSCKVMREPNGMSKGSGFVAFSAPEE
ASRALAEMNGKMVGGKPLYVAVAQRKEERKARLQAQFSQVRPVTMIPNVGPRVPIYPPGA
PGMGQQIFYGQTPPTLVPPQPGFGFQQQLIPGMRPGGPPMPNFFMPVVQQGQQGHRPSGR
RSGGPVQQMQQPMPLIQQQQMLPRGRVQRYAPGRNMSDVPMPGIVGGMLSPYDMGGLGYR
DIGMSQSIPIGTLASALANATFEQQRMMLGENLYPLVEQYERDHAAKVTGMLLEMDQTEV
LHLLESPEALKAKVAEAMEVLLNVAQQQQGNAPSDQLAALSLSDGLVS
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagtctacggttgagcagcagacgtcggacggggaggtcaacaacggcggaggc
aaccagattccgttgtcgtcgctttacgtgggggacctccatccaagcgtcacggaacca
caaatatttgaattttttagccagatcggaccggttatttccgtgcgcctctgccaagac
tctgatacccggcggtcgctcggctatgcgtatgttaactatagcaaccctgcggatgct
gcaatggctttggatgtgctcaacttcacacttattaacaacaagcctattcgtatcatg
tattcaaatcgtgaccctagcatccgaaaaagtgggtctgcaaatgtttttatcaagaat
cttgacaaaacaataaacaacaaagcactacatgagattttttcgtcatttggtagtatc
ctgtcatgcaaaatcgtaacagatacatttgggcagtcaaaaggctatggttttgttcaa
tttgatcgagaagaggctgctcaaagtgcaattagcaaactgaatggtgcacttatgaat
gacaaaccagtttatgttggacccttcgtccgcaagcaggaaagggaaaactccgcagac
aagacaaaatttactaatgtctttgtaaaaaatctttcagagtcaactacaaaggaggac
ctagaaaatatttttggaaaatatgggaaaatcaccagtgcagttgttatgatcgaggag
gatggaaaatcaaagtgctttgggtttgttaattttgacgatccagatgctgctgctcta
gcagttcaagaactcaatggacagcaatttgatgataaggaatggtacgtcggaaaggca
ttgaaaaagtctgaaagggattcagaacttagggaaaagattgagcaaactgctacggag
acaattgataagtatcatggactcaatttatatttgaagaacttagatgatagtattgga
gatgataagctggtagaattattttctggctttgggataataacttcctgcaaggttatg
cgggaacctaatggtatgagtaaaggctctggatttgttgctttctcagctcctgaagaa
gcatctcgagctctggcagagatgaatggaaaaatggttggtgggaagccactttatgtt
gcagttgcacaacgcaaagaagagagaaaagctaggttgcaggctcagttttcacaagta
cgaccagtaactatgatacctaatgttggtccacgtgttcccatctacccccctggtgct
ccgggtatggggcaacaaatattttatggccaaacgcctcctacacttgttccacctcag
ccaggatttggctttcagcaacagcttattcctggaatgaggcccggtgggccacctatg
ccaaatttcttcatgcctgtagtccaacaaggtcagcaggggcatcgcccaagtggtaga
cgtagtggaggaccagtgcaacaaatgcaacaaccaatgcctttgatccagcaacagcag
atgcttccaaggggtcgcgtccagcgctatgctcctggtcgcaacatgtctgacgttccg
atgcctggtattgttggagggatgctctctccatatgatatgggaggtctgggataccga
gatattggcatgtcacaatctattcccattgggacactggcttcagcacttgcaaatgct
actttcgagcagcaaaggatgatgcttggtgagaatctttacccacttgtggagcaatat
gagcgagatcatgctgccaaagttacaggaatgttgctggagatggaccaaactgaagtg
ctgcatttgctagaatcgccagaagctctgaaagcaaaagttgcagaggcaatggaagtc
ctgctaaatgtagcgcaacagcaacaggggaatgctcccagcgatcagctagcagcgctg
tcgctgagtgatggccttgtctcttga
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