Zingiber officinale (ginger): 122053067
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Entry
122053067 CDS
T08725
Name
(RefSeq) ribosome maturation protein SBDS-like
KO
K14574
ribosome maturation protein SDO1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122053067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
zof03009
]
122053067
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
122053067
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBDS_N
SBDS_domain_II
SBDS_C
zf-C2H2_jaz
zf-met
zf-C2H2_2
HTH_KIF26A_B_1st
Motif
Other DBs
NCBI-GeneID:
122053067
NCBI-ProteinID:
XP_042470874
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Position
3A:complement(159558610..159562346)
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AA seq
355 aa
AA seq
DB search
MSKTLVQPIGQKRLTNVAVVRLKKHGIRFEIACYKNKVLSWRSGVEKDLDEVLQSQTVYS
NVSKGILAKSKELIAAFGTDDQSKICLEILEKGELQVAGKERESQLSSQFRDIATIVMQK
TINPETHRPYTISMIERLMHETHFAVDSNQSSKKQALEVIRELQKHFPIERSPMRLRLVV
PEKSFPTLIEKLSGWNPNITSKDESGNEPSLVCELEPRFFRDCDAMMRSLQGRLEILAVS
VHMEGDAQVDQYDTEEFMPRSTKEPSAVTQLGERLHEQEISTGNGHGEDQAKQNRCSACG
VAFGDAKQYREHFKSDWHKHNLKRKTRQLPPLTAEECLADLELGDSKADLKEYSF
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaccttggtgcagcccatcgggcagaagcgcctcactaacgtggcggttgtt
cgtctcaagaagcacggaatcaggttcgagatcgcctgctacaagaacaaggtcctttcg
tggcgatcaggagtagagaaggatttggatgaagtgttgcagtcacaaacagtttattca
aatgtatcaaaaggaattcttgcgaagtcaaaggaattgatcgcagcatttggcaccgat
gatcagtcaaaaatatgtttggagatcttggaaaaaggagagcttcaagttgctgggaag
gagagagaatctcagttatctagtcagttccgggatattgcaactatcgtgatgcagaag
acaatcaaccctgaaactcatcgtccctatacaattagcatgattgagcgacttatgcat
gagactcattttgcagtggattccaatcaaagctcaaaaaaacaggcattggaagttatt
agggagcttcaaaagcatttccctattgaaagatcccctatgagattgcggcttgttgtg
ccagagaaaagctttcctactctcatagagaaactcagtggttggaatcctaatattact
tccaaggatgagtctggaaatgaaccatctcttgtttgcgagttagaacccagatttttt
cgtgattgtgatgccatgatgaggagcttgcaagggaggttggaaatacttgccgtatct
gtgcatatggagggggatgctcaggtcgaccagtatgatactgaagaatttatgccaagg
tcaacaaaggagccatctgcagttactcaactgggtgagaggctgcacgagcaagaaatt
tccactgggaatggtcacggcgaagatcaggccaagcagaacagatgcagcgcctgtggt
gttgcatttggagatgctaaacagtacagggagcacttcaaatctgactggcacaagcat
aacctgaagcgaaagacgaggcagcttcctccgttgactgcagaggaatgcctagctgat
ttggaactgggcgattccaaggcagatctcaaggaatactctttttga
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