KEGG   Zingiber officinale (ginger): 122053146
Entry
122053146         CDS       T08725                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A-like
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
zof  Zingiber officinale (ginger)
Pathway
zof03030  DNA replication
zof03410  Base excision repair
zof03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:zof00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    122053146
   03410 Base excision repair
    122053146
   03420 Nucleotide excision repair
    122053146
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:zof03032]
    122053146
   03400 DNA repair and recombination proteins [BR:zof03400]
    122053146
Enzymes [BR:zof01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     122053146
DNA replication proteins [BR:zof03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    122053146
DNA repair and recombination proteins [BR:zof03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      122053146
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 DNA_pol_B zf-DPOE zf_DPOE_2 DNA_pol_B_exo2 RNase_H_2 NRIP1_repr_4 DUF2316
Other DBs
NCBI-GeneID: 122053146
NCBI-ProteinID: XP_042470986
LinkDB
Position
3A:complement(161127319..161175565)
AA seq 2189 aa
MNARGRWRGRSSVARNSAKQNLHLNHEELLERKLGFDLYTEGDKKLGWLLTFSPSSWEDQ
ETNKMYSCVDLYFVSQDGSTFKVKHKFPPYFYAATKHKMEFEIEAYLKRRYEGEIADIVI
VEKEDLDLKNHLSGLRRSYLKLSFDTVQQLMRVKNDLMHVAERNKSKLEASEAFETIFIG
ESKERSQDLLDCIIDLREYDVPYHVRYAIDNDVRCGQWYDISVSSDGILLEKRADLLQRA
EVHVCAFDIETTKLPLKFPDAEHDLIMMISYMIDGQGFLIINRECVGEDIEDLEYTPKPE
FEGCFKVKNVKNEKELLKTWFAHMQEIKPSVYVTYNGDFFDWPFLETRASHNGIKMNEEI
GFQCDNHQGECRSKFSCHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYNPLEVNPEDMVR
FAVEQPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMPPDEVLRKGSGTLCEMLLM
VQAHKANVICPNKHQSDSEKFYKNRLLECETYIGGHVECLESGVFRSDIPIKFQFDPSAY
ELLMRNLDRDLQHAITVEGKMDIDSIANYEDVKTAIMEKLVYLRDHPTCEQCPLIYHLDV
AAMYPNIILTNRLQPSSIVSDVVCTACDFNRPGKNCLRKLEWVWRGETYMAKKSDYYHMK
KQIESELVENSDGMSVPFLELPKSEQQLRLKERLKKYCQKAYKRVLDKPITEVRDAGICM
RENSFYVDTVRSFRDRRYEYKDLNKYWKGKLADSKACGNQMKIQEAQDMVVLYDSLQLAH
KCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGRPLELDTDGIWCAL
PGSFPENFTFKTKDGKKKITRSYPCVMLNADVARNNTNDQYQTLKDAISKTYTTHSECSI
EFEVDGPYKAMILPASKAEGILIKKRYAVFNHDGSLAELKGFEIKRRGELKLVKVFQAEV
FDKFLHGSTLEECYAAVASVADSWLDLLDNQGIDIADSELLDYISESSTMSKSLVNYGEQ
KSLAVTTARRLADFLGDEMVKDKGLHCQYIVAREPQASQLYYLLSERAIPVAIFETEPEI
AKFYLRKWCKISSDVSIRTIVDWSYYKQRLSSNIQKIITIPAAMQKVPNPVPRVIHPDWL
HKKVCEKEDRFRQRKLVDIFNAARKDEMAHDKIFDVDIEEILSKEDDRAVPPQPVVHSYE
SNKKYSSQSSSSGAKFSNIVKQDLFIENCSSDIVNKATNYQAWLEMKKRKWKATREEKKR
RRLNNSNMLHEHVDTANKQPEKNGVNNLFRKHGSTLFRSHWQIVQLVPGLQPGHFYAWIV
VNGIMHKIPLKIPRVFYLNSKAPITEDFPGRRVKKILPHGKPNYNLIEVVITEEQFRAES
KKFAALLADPEIEGIYETKVPLEFHAIVQLGCVCKLDKAVKHKNADDGWNLNELHMKTTT
ECSYLEQSITYFYLYHSLSDGRAIYVIYFPRSTISVVVVNPFQNKELSSSILEKQFHEAC
QTLRIEPPTKGTITFKLEYVRSIEAGVKILQSTLLEYRHQHPQPAIAIIEYPGFQATKSG
IRILQEFPCVTIPCNASDCNYQALGWQVTAGKISMQRCAASSQWFMERVLLSRYAHVPFG
NIELDKLLFTADVFFSRALRDQQQVLWISDDGIPDFGGIYEGETCFVDEVNQPAYSYLGA
YRKVAVELKIHHLAVNAIHKSSLLEEMDGGSLFGEYGLQPTSSANETDYDEASGCASAFQ
VLKQLIQRCMSDAVASGNIFADAILQRLYQWLCSPMSKLHDPALHRVLDMVMRKVFVLLL
YELRKLGANIIFASFSKIIIDTGKFELLAATAYCDSLLKTLQTRDLFEWIELEPLYFWHS
LLFKDQFNYGGIRAKFQTEPPITNTEGDSQVEIVACWNMAEHLTKDIQALFHLRVSEFLH
DPWVYLQKQISSRTTTTDDSTCTPSITVTAAETLEDCINDHIRKRISNYFTEKLLEDVCS
INKRINKDNMDQPPTYGFSSSVGYQSHKGDAALEFIKHISAVLALDQNVQHDVWRMRKNL
LRLVHVKEFAPEAQFHDPCPSFILPNVICSYCNDYRDLDLGRDSVFWKDEWRCAVPQCGQ
PYNREQMENLLLKIVMQRERLYHLQDLVCIKCRQVKAARLAELCDCGGSYQCYENASIFL
SKMQVIHNIAARQNFQLLHNCTTWILQQE
NT seq 6570 nt   +upstreamnt  +downstreamnt
atgaatgcccgtggtcggtggagaggaaggtccagtgttgctagaaattcagcaaagcaa
aatctccatctgaaccatgaggaactgcttgagcgcaagttggggtttgatctctatact
gaaggtgataagaagcttggttggttactcacattttcaccatcatcatgggaggatcaa
gaaactaacaagatgtacagctgcgtggatctttactttgtttctcaagatggatctacc
tttaaagtgaaacataaatttccaccttatttctatgctgccaccaagcataagatggag
tttgaaattgaggcatatcttaagcgaagatatgaaggagaaattgctgatattgtcata
gtggagaaagaggatttggatttaaaaaaccatctttctggtttgcgcaggtcgtatttg
aagcttagctttgacactgtccaacaactgatgcgtgtaaagaatgatcttatgcatgtg
gctgaaaggaataagtcaaaattagaggcttcagaagcatttgaaaccatatttattggt
gaaagtaaggaaagatcacaagatctgttggactgcattattgaccttcgtgaatatgac
gttccatatcatgtacgttatgctattgacaatgatgttagatgtggtcaatggtatgat
atatctgtgtcaagtgatggtattttactcgagaaaagggctgatcttcttcaacgtgca
gaagttcatgtatgtgcatttgatattgaaactacaaaactgcctttgaaatttcctgac
gctgagcatgatctcataatgatgatatcctacatgatagacggacaaggtttcttgata
atcaaccgagagtgtgttggtgaggatattgaagatctggagtatactccaaaaccagaa
tttgaaggctgcttcaaagttaaaaatgtgaaaaacgagaaagaacttttaaaaacatgg
tttgcacatatgcaagagattaagccaagcgtatatgttacttacaatggtgattttttt
gattggccattcctagagacaagagcctctcataatggtattaagatgaacgaggaaatt
ggtttccagtgtgacaaccatcaaggggaatgtcgttccaaattttcgtgtcatcttgac
tgttttgcttgggtcaaacgtgacagttaccttcctcaaggaagccaaggtcttaaggct
gtcacaaaggctaaattgggttacaatccgttggaagtaaatccagaggacatggttcgt
ttcgccgtggaacaacctcagatgatggcttcatattctgtgtctgatgctgttgcaaca
tattatctatacatgacatatgttcatccatttatattctctcttgcaactataattcct
atgcccccagatgaagtccttcgaaaaggaagtggaacactttgtgaaatgctacttatg
gtacaggctcacaaggcaaatgttatttgtcctaacaaacaccagtcagactctgagaaa
ttctacaagaaccgtcttctagaatgtgagacatatattggtggccatgttgaatgtctt
gaaagtggtgtctttagatcagatattcctatcaagtttcagtttgatccatctgcctat
gagctattaatgagaaatctggatcgtgatctgcaacatgcaatcacagtagaggggaaa
atggacattgactcaattgcgaattatgaagatgtaaaaactgctataatggaaaagctt
gtctacttacgggatcatccaacatgcgagcaatgccctctaatttatcatcttgatgtt
gctgcaatgtatccaaatattattttaacaaatagacttcagccttcatccatagtttca
gatgtagtctgcactgcatgtgattttaatcgtccagggaaaaattgcctacgcaagctt
gaatgggtttggcgtggagagacctacatggccaaaaagagtgattattatcatatgaag
aaacaaattgagtcagagctggttgaaaacagtgatggtatgtcagtgccctttcttgaa
ctcccgaaatcagaacaacagttgaggctgaaagaacgcttgaagaagtactgtcagaag
gcttataagagggttctggacaagccgataacagaagttagagatgcagggatatgtatg
cgtgaaaattcattttatgtggacacagttcgaagtttccgagacaggaggtatgagtac
aaggatcttaataagtattggaagggtaaattagcagattcaaaagcttgtggaaatcag
atgaagattcaggaagcacaggatatggttgttctctatgattccttacaacttgctcat
aaatgtatactcaattctttttatggatacgtgatgcgcaaaggcgcaagatggtattca
atggaaatggcaggagttgttacctatactggagcaaagattatacaaaatgctcgttta
cttgttgaaaagattgggaggccacttgaactagatacagatggcatttggtgtgcactt
cctggatcttttccagaaaactttacattcaaaaccaaggatgggaaaaaaaagatcaca
agatcatatccctgtgttatgcttaatgccgatgttgcaagaaacaacactaacgatcaa
tatcagacgcttaaagatgctattagcaaaacttataccacacacagtgaatgctccatt
gaatttgaagttgatgggccatataaggcaatgatacttcctgcttcaaaagcagaaggg
atattgatcaagaaaagatatgcagtttttaatcatgatggctctcttgctgaacttaaa
ggctttgagatcaaacgcagaggtgagctgaagcttgtcaaggttttccaggcagaggtt
tttgataaatttctccatggttcaaccttagaagaatgttatgcagctgttgcatctgtt
gcagacagttggttagatttattagataaccaaggcattgatattgccgacagtgagctt
cttgattacatatcagagtcaagcacaatgagcaagtctttggtcaactatggggagcaa
aaatcattggcagtaactactgcaagaaggcttgctgattttctgggagatgaaatggtg
aaagacaaaggacttcattgccaatacatagttgcccgtgaaccacaggcaagccaattg
tactatctattaagtgagcgtgcaatacctgttgcaatatttgaaacagaaccagagatt
gctaaattctatctacgcaaatggtgtaaaatatcttctgacgtgagcatccggacaatc
gttgattggtcttattacaagcaacgtctaagttcaaatattcaaaaaattatcaccatt
cctgctgctatgcagaaggttcctaacccagtacctcgggtgatccatcctgattggttg
cacaagaaagtttgtgagaaagaggatagatttcgtcaacgcaaacttgttgatatcttt
aatgcagcaaggaaagatgagatggctcatgacaaaatttttgatgtggatatagaagaa
attttgtccaaagaagatgatagagcagtcccacctcagccagtagttcatagctatgaa
agtaacaaaaagtattcaagccaatcatcttcatctggagcaaaattttctaatattgtg
aagcaagatctctttattgaaaattgttcaagtgacattgtgaacaaggcaactaactat
caggcttggcttgaaatgaagaaaagaaaatggaaagccactcgtgaagaaaagaaaagg
cgcagattaaacaattcaaacatgttgcatgaacatgttgacacagctaacaagcagccc
gagaaaaatggggttaacaatctgttcagaaagcatggatcaactctttttcggtcacat
tggcagatagttcaacttgttccaggactacaacctgggcatttttatgcttggattgtt
gtcaatggtattatgcataagattccattaaagatcccaagagtcttttatctaaactcg
aaggctcctattacagaagattttcctggaagacgtgttaaaaagattcttccacatggc
aaacctaactacaatctcattgaggttgttatcactgaagaacaattcagggctgaaagc
aagaaatttgctgctctcctggcagatccagaaattgaggggatatatgaaacaaaagtg
ccactggagtttcatgctattgtccagctaggttgcgtatgcaaattagataaagctgtt
aaacataaaaatgctgatgatggatggaaccttaatgagttgcatatgaagactacaaca
gaatgctcatatctagaacaatcaattacctacttttatctctaccatagtttgtccgat
ggtagggcaatctacgttatatatttccctagatcgacgatatctgttgtggttgtaaac
ccttttcagaacaaagaactatcctcatcaattcttgagaagcaatttcatgaagcttgc
caaacattacgtatcgagcctccaacaaagggcactattacattcaagctggagtatgtt
cgttcaattgaagctggagtcaagattttgcaaagtacattacttgaatacaggcatcaa
catccccaacctgctatcgctatcatagaatatccaggctttcaagccacaaaatcaggg
ataagaattctgcaagagtttccttgtgttacaattccttgtaatgccagtgactgtaat
tatcaggctcttggatggcaagtcacagctggcaaaattagcatgcaaagatgtgcggca
tcatcccaatggttcatggaaagggttttgctttcgagatatgcacatgttccatttgga
aacatcgagcttgataagcttctttttactgctgatgtcttcttctctagggcattgcgt
gaccaacaacaggtactgtggatatctgatgatggcattccagattttggtggtatttat
gagggagagacatgctttgttgacgaagtcaaccaacctgcttatagctatctcggtgca
tatagaaaagtggcagttgaactcaagatacaccacctagctgtgaatgctatccacaag
agtagtctacttgaagaaatggatgggggatctttatttggtgaatatggtttgcagcct
acatcttctgctaatgaaactgattatgatgaagccagtggatgcgcttctgcatttcaa
gtactaaagcaactaattcaaagatgcatgtcagatgcagtggcttctggtaatatcttt
gctgatgcaattttgcagcgtctttaccagtggctttgcagccccatgtcaaaacttcat
gaccctgcacttcaccgtgtgttggatatggtcatgagaaaggtatttgttttactgctt
tatgagttgcgaaaactaggagcaaatatcatcttcgcgagcttctctaagatcataatc
gacactggcaagtttgaactgttggctgcaacagcatattgtgattctctgctgaaaact
ttacaaacaagagacctttttgaatggattgagcttgagcctctgtatttttggcattca
ttgttatttaaggatcagtttaattatggtggaattcgggccaaattccaaacggaaccc
ccaatcacaaacacagagggtgactctcaagtagaaattgtagcatgctggaacatggca
gaacacttaactaaggacattcaggccctctttcacttgagagtctcagaattcttgcat
gatccttgggtgtacttacaaaagcaaatttcttctcgaactactacaactgatgatagt
acttgtacaccctcaatcacagtgactgctgctgaaactctggaagactgcatcaatgac
cacattaggaaacggataagcaattatttcactgagaaacttcttgaagatgtatgctct
ataaacaagaggataaacaaagacaatatggatcagcctccaacttatggtttttcaagt
tcagttggatatcaaagtcataaaggagatgctgcattggaattcattaaacacatttct
gctgttcttgctcttgatcaaaatgttcaacatgatgtttggaggatgaggaagaattta
ctaagactggttcatgtaaaagaatttgctccagaagcacagtttcatgatccttgtcca
tctttcatacttccgaatgttatttgcagctactgcaatgattatcgtgatttagatctt
ggtcgtgattctgtgttttggaaggatgaatggcgctgtgcggtgccgcaatgtggacag
ccatacaaccgtgagcagatggaaaatctcctcctcaaaatagtcatgcagagagaaagg
ctttatcacttgcaggatcttgtttgcatcaagtgtagacaagttaaggctgctcgcttg
gcagagctgtgtgattgtggaggttcataccagtgttatgaaaatgcatctatcttctta
agcaaaatgcaagttattcacaacattgcagcacgtcaaaatttccaactgctccataac
tgcaccacttggattctacaacaagaataa

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