Zingiber officinale (ginger): 122053279
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Entry
122053279 CDS
T08725
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122053279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122053279
03041 Spliceosome [BR:
zof03041
]
122053279
03036 Chromosome and associated proteins [BR:
zof03036
]
122053279
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
122053279
Spliceosome [BR:
zof03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
122053279
Complex B
122053279
Complex C
U2 SnRNP specific factors
122053279
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
122053279
TFTC complex
122053279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Beta-prop_LRRK2
Motif
Other DBs
NCBI-GeneID:
122053279
NCBI-ProteinID:
XP_042471204
LinkDB
All DBs
Position
3A:163411473..163420501
Genome browser
AA seq
1215 aa
AA seq
DB search
MYLYSLTLQRAGGIVCATNGNFVGGKTQEIVVARGKNLDLLRPDESGKLQTLLSVDVFGA
IRSLAQFRLTGSQKDYLVVGSDSGRLVILEYSREHNMFHKVHQETFGKSGCRRIVPGQFL
AVDPKGRAVMVAACEKQKLVYVLNRDAAARLTISSPLEAHKSHTITYSVVGVDCGFDNPI
FASIELDYSESDLDPTGQAAADAQKHLTFYELDLGLNHVSRKWSEPVDNGANLLVTVPGG
GDGPSGVLVCAENFVIYKNQGHPDVRAVIPRHTDLPAERGVLVVSAATHRQKSMFFFLLQ
TEYGDIFKVTLEHEGDRVTELKIKYFDTIPVTTSMCVLKTGFLFAASEFGNHALYQFQAI
GEAEDIEASSATLMETDEGFQPVFFQPRGLKNLVRIDLVESLMPIMDMKILNLFEEETPQ
VFTLCGRGPRSSLRILRPGLAINEMAVSQLPGTPSAVWTVKKNINDEFDAYIVVSFVNAT
LVLSIGETIEEVSDSGFLDTTPSLSVSLLGDESLMQVHPNGIRHIREDGRINEWKTPGKK
TIVKVGSNRLQVVIALSGGELIYFEMDLTGQLMEVEKHEMPGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLLLEVMASTGGEDGADHPASVFL
NAGLQNGVLFRTVVDMVTGQLSDTRSRFLGLRAPKLFSATVRGRQAMLCLSSRPWLGYIH
QGHFLLTPLSYEALEYAASFSSDQCAEGVVAVANEALRIFTVERLGETFNETVVPLRYTP
RKFVLLPKRKHLIVIESDQGAFTAEEREAARKECLEAAGMGENGNANNGEQMENGDGDDE
KEDALPDEQYGYPKAESDRWASCIRVLDPKTGNTTCLLELQDNEAAFSICTVNFHDKEYG
TLLAVGTAKGLQFWPKRTVAAGFIHIYRFVEEGKSLELLHKTQVEGVPLALHQFQGRLLA
GIGPVLRLYDLGKRRLLRKCENKLFPHTIVSINTYRDRIYVGDIQESFHYCKYRRDENQL
YIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDLSDEIEEDPTGGKIKWEQGK
LNGAPNKVEEIVQFHIGDVVTCLQKASLIPGGGECVIYGTVMGSVGALLPFISREDVDFF
SHLEMHMRQEHPPLCGRDHMAFRSAYFPVKDVIDGDLCEQFPTLPPDLQRKIADELDRTP
GEILKKLEDARNKII
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgtacttatatagcttgacgctgcagagggcgggtgggattgtgtgcgctaccaatggg
aacttcgtcggcggcaagactcaggaaatcgtggtggctcggggcaaaaacctggatctc
ctccgtcccgacgaatccggtaagctgcagacccttctgtccgtcgatgtcttcggcgcc
atccgctcgctcgcccagttccggctcaccggttcccagaaagactaccttgtagttggc
tctgactccggccgcctcgttatcctcgagtactcccgcgagcacaatatgttccacaag
gttcaccaggagacgttcggcaaatctggctgccgcaggatcgtccccggccagttcctc
gctgtcgaccccaagggtcgcgctgtcatggttgctgcctgcgagaagcagaagcttgtc
tacgtcctcaaccgtgatgctgccgcccgcctcacgatctcctcccccctcgaggcccac
aagtctcacactatcacctactcggttgtcggggtcgactgcggcttcgataatcccatc
tttgcctccatcgagttagattactccgagtctgatcttgacccgaccggacaggctgcc
gcagacgctcagaagcacctcacattctatgagcttgaccttggcctcaaccatgtctct
cgcaagtggtccgaacctgttgacaatggtgcaaatctcctcgttactgtgccgggtggt
ggtgatggccccagcggtgtccttgtatgtgccgagaatttcgttatctacaagaaccaa
ggccacccagatgtccgtgctgtcattcctcgccatactgacctccctgctgagcgtgga
gtacttgtggtttctgctgccacccaccgccaaaagtccatgttcttcttcttactgcag
accgagtatggggacatcttcaaggtcactcttgagcatgagggcgaccgggtaactgag
ctcaagattaagtattttgacaccattcctgtcaccacttccatgtgcgtcctgaagact
ggctttctgtttgcagcttccgagtttggcaaccatgccctctatcagttccaggccatt
ggtgaggctgaggatattgaagcttcatctgccactctgatggagaccgacgagggattc
caaccggtcttcttccagccacgtggcttaaagaacctagtccggattgaccttgttgaa
agtctcatgcccatcatggacatgaagatactgaatctctttgaggaagaaactcctcag
gtattcacactctgtggtaggggcccacgctcatcgctgcgcattttaaggccaggtttg
gcaatcaatgagatggcagtgtcacaacttccaggcacacccagtgcagtctggactgtg
aagaagaatatcaatgatgaatttgatgcttacattgtcgtctcttttgtgaatgccaca
cttgtgctctccattggtgagaccattgaagaagtcagtgatagtgggtttcttgacact
acaccttcactttctgtctctttgctaggagatgaatctctaatgcaggtccatcccaat
ggaattaggcatatcagagaggatggccgtatcaatgagtggaagacacctggtaagaag
accattgtgaaggttggctccaacaggctccaggtggttattgctctgagcggaggggaa
cttatctattttgagatggacttgactggacaattgatggaggtggagaagcatgagatg
cctggggatgtggcgtgcttagatattgcaccagttccagagggcaggcagagatctcgt
ttccttgcagttggatcttatgataacacaataaggattctgtcattggatcctgatgac
tgtatgcagatcttgagtgttcagagtgtgtcttcaccacctgagtcactcctattgctt
gaggtaatggcttccactggaggagaggatggagctgatcatcctgccagtgtttttctt
aatgctggtttgcagaatggtgttctcttccggacagttgttgatatggtcactggtcag
ctctctgatacccgatcccggttcttaggattgagagctcccaagctattctcagctact
gtaagaggccgacaagctatgctttgcttgtccagtaggccttggcttggttatattcat
caaggtcactttttgctgactcctctctcatatgaggctcttgaatatgctgcatctttt
tcttctgatcaatgtgctgaaggagttgttgcagtggcaaatgaagctctgagaattttc
acagttgagcgactgggagagacattcaatgagacagttgtacctttgcgatatactcct
aggaaatttgtgctgctgcccaagcgcaagcatttaattgtcattgagagtgatcaaggg
gcatttactgcagaagagcgagaagctgctcggaaggaatgcttggaagctgctgggatg
ggcgaaaatggaaatgcaaataatggtgaacagatggaaaatggtgatggtgatgatgag
aaggaggatgctcttccagatgagcaatatggctatccaaaggcagaatcagataggtgg
gcctcttgcatcagagttcttgatcccaaaacaggaaatacaacttgtctgttggagctt
caagacaatgaagctgcatttagcatttgtactgtgaacttccatgataaggagtatggg
acacttttggctgttggaactgcaaaaggattacaattctggcctaaaagaactgttgct
gctgggttcattcacatatatagatttgttgaggaaggaaaatctcttgagcttttgcac
aagacacaagtagagggagttccacttgctttgcaccagtttcaggggagactccttgca
ggtattggtccagtactcagattgtatgacctaggaaaaaggaggttgctcagaaaatgc
gaaaacaagctctttccccacactattgtttctatcaatacatatcgtgataggatttat
gttggtgatatccaggagtcatttcattactgcaagtacagaagggatgaaaaccaactt
tacatatttgcggatgattctgtcccaaggtggctcactgcagcacatcacatagatttt
gacaccatggctggagctgacaagtttggaaacatatactttgttcgactgccacaagat
ttatcagatgagatcgaggaagatcccacaggaggtaaaataaagtgggagcaagggaaa
ttgaatggtgctcctaataaagtcgaggagattgtgcagtttcatataggagatgttgtg
acatgcttgcaaaaggcctctttgatacctggaggaggtgaatgtgttatatatgggact
gtgatgggaagtgtaggtgcattacttccatttatctccagagaagatgtggatttcttt
tcccacttggaaatgcacatgaggcaagaacatccgcctttgtgtggtagggatcatatg
gccttcagatctgcttatttccctgtcaaggatgtaattgatggtgatctatgtgagcag
ttcccaactcttcctcctgatttgcagaggaagattgctgatgaacttgatagaactcca
ggagaaatattgaagaaacttgaagatgccagaaacaaaatcatttaa
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