Zingiber officinale (ginger): 122053288
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Entry
122053288 CDS
T08725
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122053288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122053288
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122053288
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122053288
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
DUF4857
Motif
Other DBs
NCBI-GeneID:
122053288
NCBI-ProteinID:
XP_042471216
LinkDB
All DBs
Position
3A:163562791..163563817
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AA seq
283 aa
AA seq
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MPSWEAHKSSAGGESAQISIRSVWADNLDDEFDLIREAVERYPFAAMDTEFPGVIHRSRK
HPAALTAAERYDALKANVDALRLIQVGLTLSDAAGNLPDLGGEDGVRYLWEFNFRDFDPC
RDRHAPESVELLKANGIDFEKNRARGIDSRRFAELLMSSGLVCNDSAVSWVTFHSAYDFG
YLIKILTCRDLPKNLPEFMVLVRIFFGERVFDMKHMIRYCDSLYGGLDRVAATLQVGRVV
GRCHQAGSDSLLTWLAFRRMKEIFFVEDDGERHAGVLYGLEVC
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgtgggaagcgcacaaatcgtcggccggcggcgagtcggcccaaatctcgatc
cggtccgtctgggccgacaacctcgacgacgagttcgacctcatcagggaggccgtcgag
cgctaccccttcgcggccatggacaccgagttccccggcgtgatccaccgctcccggaag
cacccggccgccctcaccgccgccgagcgttacgacgccctcaaggcgaacgtcgacgcc
ctccgcctgattcaggtggggctcaccctctccgacgccgccgggaatcttccggacctc
ggcggcgaggacggcgttcgctacctctgggaatttaacttccgcgacttcgacccctgc
cgcgaccgccacgcgccggagtccgtcgaactgctcaaggccaatgggatcgacttcgag
aagaaccgggcgcgtgggatcgactcccgccgcttcgccgagctgctcatgtcgtccggg
ctggtgtgcaacgactccgccgtgtcgtgggtcacgttccacagcgcatacgacttcggc
tacttgataaagatccttacttgtcgcgaccttccgaagaatctgccggaattcatggtt
ctcgtcaggattttcttcggggagagggtatttgacatgaaacacatgatcagatactgc
gacagtttgtatggcgggttggatcgagtcgccgccacactccaagtcggccgggttgtg
ggacggtgccaccaggcaggttccgacagcttgctaacgtggctggccttccgccggatg
aaggagatcttcttcgtggaggacgacggcgagaggcacgccggagttctctacggtctg
gaagtttgctga
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