Zingiber officinale (ginger): 122053419
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Entry
122053419 CDS
T08725
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122053419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
zof03041
]
122053419
Spliceosome [BR:
zof03041
]
Complex A
U1 snRNP components
U1 related factors
122053419
Complex B
122053419
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
122053419
NCBI-ProteinID:
XP_042471401
LinkDB
All DBs
Position
3A:complement(165441465..165452715)
Genome browser
AA seq
1061 aa
AA seq
DB search
MFLELNGCNRLVDLLLFKDNCHSNQESQKRMTSNPQSSGAQPLRPPVVGSAGPPPNFGAS
MPVQYRTMVPAPQFVPAASQQFRPVPQGMPAPNIAMPAGQTQMPHFSQSTQQLPPMSGQP
GQVPPSSQAIPMPYVQASRPISSGPLPPQQNAQVPNNVPNLPGAAMPLSSSYTFATSYVQ
APNTINAPVQYQPATQVTPSRTQTWATPGTQSVPLVAPLHQTAQQPLATSVTVPAQTVQS
NSTEQSSSDWQEHTAADGKRYYYNKKTRQSVWEKPLELMTPIERADASTDWKEFTTSDGR
KYYYNKATKQSKWTIPDDLKLAREQAENTAANLTSNETETTATVTSTVHSAEISSSNPVA
SAVPLVSSNSTQLPTNYGVQPNVMALTPTSVAVATNSGMTSSSVGTEHTSLQSGIPQPPP
LRDQFSNAGVDDTITEIRSNQDKSPSTHIASLPDGTSQDLEEDKKTMPTVEKSGTPTEDK
EVDEEPLVYANKLEAKNAFKALLESVNVESDWTWEQAMRIIINDKRYSALKTLGERKQAF
NEYLGQRKKQEAEEKRIKQKKAREDFTRMLEECKELTSQTRWGKAISMFEDDERFSAVER
PREREDLFESYLVELQKKERIKAAEEHKRNIMEYRAFLESSDFIKANSQWRKVQDRLEDD
ERCSRLEKLDRLEIFQEYIHDLEKEEEEQRKIQKEQLRRVERKNRDEFRRLMEEHIAAGI
LTAKTHWRDYCAQVKDSAPYLAVASNSSGSTPKDLFEDVFEELQKQYHEEKIQIKDAMKI
GKITLTLSWTFEDFKNSIADIDIQKGVSEISLKLVYDELLERLREKEEKEAKKRQRLADN
FSDLLYSIKEISASSKWEECISLFEESQDYRSICDDNFAKEIFEGYIAHLQEKLKEKERR
REEEKAKKEKEREEKERRKEKERKEKDREREKEKGKDRVRKEETESDIVDAMDRDGTKDR
KRDKDKEKKHRKRHHSTTDDLSSDKDEKEESKKSRRYSSSDRKKSRKHSYGTDSDTENRH
KRHKKDRDGTRRNGGYEELEDGELGEDGEIPISRISGIELN
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atgttcttggaacttaatgggtgtaacaggttagtagatttgcttttgttcaaggataat
tgccactcaaatcaggaatcacagaagagaatgactagcaatccacaatcttcaggggca
cagccccttagacctccagtagtgggttctgctggtccaccaccaaattttggtgcctcc
atgcctgtacaatataggacaatggttccagccccacaatttgtcccagctgcctctcag
caatttaggcctgtcccccaaggaatgccagcgccaaatattgccatgcctgctggtcaa
actcaaatgcctcatttttctcaatcaacacagcaattgcctccaatgtcaggccaaccg
ggtcaagtgccgccatcatcccaagcaattccaatgccatatgttcaagcaagtagacct
atctcatctgggccgttgccacctcaacaaaatgctcaagtgccaaacaatgtgcctaat
cttccaggtgcagcaatgcccctttcttcatcatacacgtttgcaacatcttatgttcag
gcaccaaataccataaatgctccagttcagtatcaaccagcaacacaggtgaccccttcg
aggacacaaacctgggcaacacctggaactcagagtgtacctcttgttgcacctttgcat
cagactgcccaacaacctttggctacctctgtgactgttccagcacaaactgtacaatca
aattctacagaacagagctcttctgactggcaagagcacactgctgctgatggaaaaaga
tactattataataagaagactaggcaatctgtctgggagaaaccccttgaattgatgacg
cctattgagagggcagatgcatccactgactggaaggagtttactacctcagacggtcga
aaatactactataacaaggccacaaagcaatccaaatggacaattcctgatgatcttaag
ctagcccgagagcaggcagagaacactgctgctaatctgacatcaaatgagactgaaaca
actgcaactgttacttcaacagttcattctgctgagatttcttcttccaatcctgtggct
tctgctgtgcccttggtctcatctaattcaacgcaattgccaactaattatggtgtacaa
ccaaatgttatggcattaacacctacatctgtagcagttgcaacaaattctggtatgact
tctagttctgttgggacagaacacacaagcttgcaatctggaattcctcaacctcctcct
ttgagggatcaattttctaatgctggcgttgatgataccatcactgaaattaggagtaat
caggataaatcaccctcgacacacattgctagcttacctgatgggacttctcaggatctt
gaggaagacaaaaaaaccatgccaactgttgagaaatcgggcactccaactgaagataaa
gaagttgatgaagaacccttggtttatgctaataagctggaggcaaaaaatgctttcaag
gctttacttgaatctgtcaacgttgagtctgattggacatgggagcaggcaatgaggatt
atcatcaacgacaaaagatacagtgctttgaaaactcttggagaaagaaaacaagcattt
aatgagtatttgggtcaaaggaaaaaacaagaggctgaggagaagcggatcaaacagaag
aaagcacgggaagattttacaagaatgttagaagaatgcaaggaactgacatcacagact
cgatggggaaaggctatatccatgtttgaggatgatgaacgtttcagtgctgttgagcgt
ccaagagagcgtgaggatctatttgaaagttatttagtggagcttcaaaagaaggaaagg
ataaaggctgctgaggagcataaaagaaatataatggaatacagagcatttcttgaatcc
tctgactttataaaggcaaacagccagtggagaaaagtccaagaccgtttggaggatgac
gaaagatgctctcgactagaaaagcttgatcggttggaaatttttcaggaatatattcat
gatttagagaaagaggaggaggagcagaggaagatacaaaaggaacaattacggcgtgtg
gaacgtaagaaccgtgatgagttccgtaggttgatggaagaacatattgctgctggaatt
cttactgccaaaacacattggcgtgattattgtgcacaggttaaagattcagcaccttac
ttagcagtggcatcaaactcatctggttcaaccccaaaagacctttttgaagatgttttt
gaggaacttcagaagcagtatcacgaagagaaaattcaaattaaagatgcaatgaagatt
ggaaaaattactttgactttgtcatggacattcgaggacttcaaaaatagtattgcagat
attgatatccagaaaggagtatctgagataagcttgaaactcgtttatgatgaattactc
gaaaggcttagggagaaagaggaaaaagaggctaaaaagcgccaacgtcttgcagataat
ttctctgatctgttatattcaatcaaggaaatttctgcatcttccaagtgggaggagtgc
atatcactatttgaagagagccaggattataggtcaatttgtgatgacaattttgcaaaa
gagatttttgagggctatattgctcatttgcaagaaaaactgaaagaaaaagagcgcagg
agggaagaagaaaaggcaaaaaaggaaaaagaaagagaagagaaagagagaaggaaggag
aaagagagaaaggagaaagacagagaacgtgaaaaggaaaagggaaaagaccgagttcga
aaagaagaaacagaaagtgacattgtggatgcgatggatcgagatggtacgaaggatcgg
aaacgggataaagacaaagaaaagaagcacaggaagcgccatcacagcacaacagatgat
ttaagctctgataaggatgagaaagaggagtctaagaagtccaggaggtacagcagtagt
gaccgaaagaaatctcggaagcattcatatggtactgattctgacactgaaaatcggcac
aaaaggcataagaaagatagagatggaactcggagaaatggtggttatgaggaactagaa
gatggagaacttggagaggatggggaaattcctatttcaaggattagcggaattgaattg
aattga
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