Zingiber officinale (ginger): 122054166
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Entry
122054166 CDS
T08725
Name
(RefSeq) BRCA1-associated RING domain protein 1-like isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122054166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122054166
04121 Ubiquitin system [BR:
zof04121
]
122054166
03036 Chromosome and associated proteins [BR:
zof03036
]
122054166
03400 DNA repair and recombination proteins [BR:
zof03400
]
122054166
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
122054166
Ubiquitin system [BR:
zof04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
122054166
Chromosome and associated proteins [BR:
zof03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
122054166
DNA repair and recombination proteins [BR:
zof03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
122054166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-HC5HC2H_2
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_2
zf-C3HC4_4
PTCB-BRCT
zf-RING_2
zf-RING_5
zf-RING_6
PHD_NSD
Prok-RING_4
zf-RING_10
RTT107_BRCT_5
U-box
zf-P11
zf-Nse
Motif
Other DBs
NCBI-GeneID:
122054166
NCBI-ProteinID:
XP_042471911
LinkDB
All DBs
Position
3A:complement(154957563..154961737)
Genome browser
AA seq
639 aa
AA seq
DB search
MEDLGAFRRFANPLLFNLQKLELELTCAICLRLLRMPMLLPCNHMYCRSCITTTTRNTQD
CAVCKAPFSKQDLRTAGHIEAIAHICKNMTSTVNAVVNQGPQVAISDTKMHSANVRLDSG
NNDLAEKFGQLTDIIDKKRSCHVKSTATLFGYMNPLENKFEGKLHEHKLNADEKVSEEAE
INKFLAPGDTFSPQSSGCQKSSENDSYDGRSEPTTGQLPVTESFKRAADNETCLMENGFL
VESKKQRLNKDNDHMHEKLINCAFCHTSIATEGSGPMLHYLNGEPMTEEQASQPNVLHVH
QKCIEWAPQVYFVDETAMNLEAELSRASKIKCSHCGLKGAALGCYNKSCRRSYHVPCADA
ISDCRWDYEKFLLLCPMHSSHRLPCDKSTNKKKTSANTTLCHSNPMDQPPCTKHFGGTWT
ASPCVTREWILCGSALSREEKNTLNEFVTLSGASTTSVWNSSITHVIAATDEHGACSRTL
KVLMAILGGKWVLRVDWLKTCMEAGHPVAEEPYEITHDIHGSFDGPRNGRLRASQKAPKV
FSSLSFYFNGYFMPNYKKYLETLISAAGGRFLEGSEVVTTTLIVYSAEPPQGSDPSDLNG
VIKRRREEAESFAANTSSRVIPHTWLLDAIASCNLPQIV
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggaggatttgggagctttcaggcgatttgcaaatcctttacttttcaatctccagaag
ttggagttggagctgacttgcgccatatgcttaagactgctcagaatgccaatgttgtta
ccatgtaaccatatgtactgcagatcttgtattactactaccacaagaaatacacaagac
tgtgctgtgtgtaaagcacctttttctaaacaagacttaaggactgcaggccatattgaa
gcgattgcacatatttgcaaaaacatgacttctacagttaatgctgttgtgaatcaaggt
ccgcaagttgctatttctgacacaaagatgcattcagcaaatgtaaggctagattctggc
aacaatgacttggcagaaaaatttggacaacttacagatatcatagataagaaaaggtca
tgtcatgtcaagtctactgcaacattgtttggatatatgaatccattagaaaataagttt
gagggaaaactacatgaacacaagctgaatgcagatgagaaagtcagcgaagaagctgag
atcaataagttccttgcaccaggggatacattcagtcctcaatcttctggttgtcaaaaa
tcttcagagaatgacagctatgatggacgaagtgaaccaaccactggacaattgcctgtc
acagagtcattcaagagagctgcagataatgaaacctgcctgatggaaaatggctttttg
gtcgagtcaaaaaagcaaaggctaaacaaggataatgatcacatgcacgaaaaacttata
aattgtgcattttgccacacttcaatagccaccgagggatctggaccaatgttacattat
cttaatggagaaccaatgacggaggagcaagcgtcacaacctaatgtcctgcacgtccat
caaaaatgtatagaatgggcaccacaagtttattttgttgatgagactgctatgaatttg
gaggccgagctgtcacgcgcatcaaagatcaaatgcagtcactgtggcttaaaaggagct
gcactcgggtgttacaacaagagttgcagaagaagttatcacgttccttgtgctgatgcg
atctcagactgcagatgggactatgagaaatttcttttgctttgtccaatgcactcttca
catagacttccatgcgataaatccactaacaagaaaaagacatcagcaaacaccacatta
tgccattccaatccgatggatcagcctccgtgcacaaagcatttcggaggaacttggact
gcatctccatgtgtaacaagagaatggatactttgtggatctgccttgtccagggaggag
aagaacacgctaaatgaatttgtaacattatccggagcttctacaaccagcgtatggaat
tcgagcataacacacgtgatcgctgccacggatgagcatggtgcttgcagcagaacgctc
aaagttctaatggccatcttgggtgggaagtgggttctacgtgttgactggcttaagacc
tgcatggaggctggtcatccagtggcggaggaaccttatgaaatcacccacgacattcat
ggatcatttgatggaccaagaaatgggcgactaagagcttctcaaaaggcgccaaaagtg
ttttcaagtctgtccttttactttaatggttattttatgccaaactacaagaaatatctt
gagactttgatttctgctgccggtggaagatttctggagggaagtgaggttgtgacaaca
actttgatagtttatagtgcagagcctccgcaaggaagcgacccaagtgacctgaatgga
gtgatcaagaggagaagagaagaagctgagagttttgcagccaacacttcctctcgggtg
attccacatacgtggcttttggatgccattgcttcctgcaatctgccacaaattgtgtga
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