Zingiber officinale (ginger): 122054209
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Entry
122054209 CDS
T08725
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
zof
Zingiber officinale (ginger)
Pathway
zof03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122054209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
zof03021
]
122054209
Transcription machinery [BR:
zof03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
122054209
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
Motif
Other DBs
NCBI-GeneID:
122054209
NCBI-ProteinID:
XP_042471949
LinkDB
All DBs
Position
3A:complement(160847289..160853280)
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AA seq
569 aa
AA seq
DB search
MSLDLVLRPCCDRCHSTSDLYGSNCKHMTLCLECGKGMAANRGRCRLCSALITKLIQEYN
VQAMANTDEDFHIGRFPSGLPPFSKNSAENRWSLDTEGLQERQLTDILENENKPWILEDE
TGHHQYQGQVEGPQSSTATRYLLKVHGRDCFAVPDGSRYNFRKIAQGKQLTLEEAEEIMN
KRRHNATGHGRWMMKTATSGAASFREVKKNEGISQAEADEGSQVKTWKSNDEGDHSDKGD
EDEEEWETRKNRFARNKLGVDDDEGDHSDKGDEDEEEWETRKNRFAGNKLGVDDDEGHHS
DKGDEDEKEWETRKNRFARDKLGVDDDEEGGKGGDFNLDDDDDIEKGDDWEHEQTFTDDD
EAVGIDPGEQEELDPIPTPPEIKQDEEDEDEENCTLSKSGKEMKQLLIKAAILNEFKGEE
EEEDEDDDKDAPKDEPAETSPTNAAQPSGSGCSTPAESKAKSEHSSDDENRNDSLPVKTE
NTIVKAEAVMNSYKPSVSTKPPSTAAVTEEDIRAAVIVAGEPVKLRDLAAKFKPRVKTSE
ERHAFAEILKRISKLRKVNGHIYIVLRDK
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgagtctcgatttggtgctgaggccgtgctgcgaccggtgtcactcgacgtctgacctc
tatgggagcaattgcaagcacatgacgctgtgtctcgaatgcggcaagggcatggcggca
aatcgcggccgctgccgtctatgtagcgccttgattactaaattgatccaggagtacaac
gtacaggcaatggccaacactgatgaggatttccatattggaaggttcccctctggcttg
cctccattttcaaagaatagtgcagaaaataggtggtctcttgacacagaaggtcttcaa
gaacgtcaactaactgacattttggagaacgagaataaaccatggatattggaagatgag
actggccatcatcagtatcagggtcaagtggagggcccacaatcttcgactgctactcgt
tatctgttaaaggtgcatgggagggattgttttgctgttccagatggctccaggtacaat
ttcagaaaaattgcacaaggcaagcaacttactttggaagaggctgaagaaataatgaat
aaaaggaggcacaatgcaactggacatgggaggtggatgatgaagacggcaactagtggt
gctgcttcttttcgtgaagtaaagaagaacgaaggtataagccaagctgaggctgacgaa
ggcagtcaagtaaagacatggaagagcaatgatgaaggagatcattctgacaagggtgat
gaagatgaggaagaatgggaaacaagaaagaacaggttcgcacgtaacaaattgggtgtt
gatgatgatgaaggagatcattctgacaagggtgatgaagatgaggaagaatgggaaaca
agaaagaacaggttcgcaggtaacaaattgggtgttgatgatgatgaaggacatcattct
gacaagggtgatgaagatgagaaagaatgggaaacaagaaagaacaggttcgcacgtgac
aaattgggtgttgatgatgatgaagaaggtggtaaaggaggtgattttaatctagatgat
gacgacgacatcgaaaaaggtgatgactgggaacacgaacagaccttcacagatgatgat
gaagctgttggtattgatccaggggaacaagaggaattagatcctattcctactccacct
gaaattaagcaggatgaggaagatgaagatgaagaaaattgtacactgagtaaatcaggg
aaggaaatgaaacaactgcttataaaagctgctatattaaatgaattcaagggtgaggag
gaggaagaagatgaggatgatgataaagatgctcctaaggatgaaccagcagaaactagt
cccactaatgcagcacagccctctggatctggctgctccactcctgctgaatcaaaagca
aagagcgaacacagtagtgacgatgagaacagaaatgattctctacccgtgaagacggaa
aatacaattgttaaagctgaggctgttatgaattcatataaacctagtgtgtcgactaaa
ccaccatctacagcagcagttactgaggaggatattagagctgctgttattgttgctggt
gaacctgtgaagttacgggatttagctgcaaaattcaaacccagagtgaaaacttcagag
gaaaggcacgcctttgctgagattctcaagagaatatccaagttacggaaggtcaatggt
catatctacattgtgcttagagacaagtag
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