Zingiber officinale (ginger): 122054868
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Entry
122054868 CDS
T08725
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
zof
Zingiber officinale (ginger)
Pathway
zof04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
zof00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122054868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
zof03019
]
122054868
03009 Ribosome biogenesis [BR:
zof03009
]
122054868
04131 Membrane trafficking [BR:
zof04131
]
122054868
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
zof04147
]
122054868
Messenger RNA biogenesis [BR:
zof03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
122054868
Ribosome biogenesis [BR:
zof03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
122054868
Membrane trafficking [BR:
zof04131
]
SNARE
SNARE associated proteins
Others
122054868
Autophagy
Aggrephagy
Other aggrephagy associated proteins
122054868
Exosome [BR:
zof04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
122054868
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
SQAPI
AAA_lid_3
Cystatin
CDC48_2
AAA_2
RuvB_N
AAA_16
AAA_22
AAA_14
TIP49
AAA_5
AAA_24
nSTAND3
AAA_33
AAA_17
AAA_18
Mg_chelatase
NPHP3_N
RCF1-5-like_lid
KAP_NTPase
AAA_19
AAA_7
Zeta_toxin
AAA_28
TsaE
DUF5906
ResIII
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
122054868
NCBI-ProteinID:
XP_042472227
LinkDB
All DBs
Position
3B:48226899..48242933
Genome browser
AA seq
449 aa
AA seq
DB search
MDGCKEGRKEGDQLTYIVARFTVDEHNKKQTVLLEFARVVKAREQVVAGTLHHLTVEAVE
GGEKKLYEAKVWVKPWLNFKQVEEFKNIELLKQILRGVGGHDDGVHSRAEVEAYFLEAYR
LVRKGDLFLVRGGMRSVEFKVIETDPAKYCIVAPDTEIFCEGEPVKREDEDRLDEVGYDD
VGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARGVANETGAL
FFCINGLEIMSKLANESESNLRKAFKEAEKNAHSIIFIDEIDSIASKREKTHGEVERRIV
SQLLTLMDGLKSRAHVIVIGATNMPNTIDPALRRFGRFDREIDIGVPDEVGRLEVLHIHT
KNMKLSDDVDLERIAKDTHGYVGVDLAALCTKAALQCIREKMDIIDLEDESIDAEILNSM
SVSNEHFKTALRFSNPSALRETISLCLGC
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggatggatgcaaggaaggaaggaaggaaggagatcagttaacctatatcgtcgctcgc
ttcaccgtcgacgagcacaacaagaaacagactgtgcttctggagtttgcgcgtgttgtg
aaggcgagggagcaggttgtcgctggaactctgcatcacttgacggtggaggcagttgag
ggaggggagaagaagctgtacgaggccaaagtgtgggtgaagccatggcttaatttcaaa
caggttgaagaattcaagaatattgagctactcaaacaaatactaagaggtgtaggagga
catgatgatggtgttcatagtagagcagaagttgaagcttattttttggaagcatatcgt
cttgttagaaaaggcgatcttttccttgtcaggggtgggatgaggagtgttgagtttaag
gttatagaaactgatcctgcaaagtactgcattgttgctcctgatacagagattttctgt
gagggggagccggtaaaaagagaagacgaggacaggcttgatgaggtaggttatgatgat
gttggaggagttaggaaacaaatggctcagataagggagctagtagagcttcctctaaga
catcctcaactatttaaatctattggtgtcaagccgccaaaaggtattttgttgtatggt
ccacctggttcaggtaagacattaatagctagaggagtcgcaaatgagacaggagcttta
ttcttttgcatcaatggtctagagatcatgtcaaagctagccaatgagagtgagagtaat
ttgaggaaggcttttaaggaagcagagaaaaatgcacactcaattatcttcattgatgag
attgattccattgcttctaagagagagaaaactcatggggaagttgaaaggcgcatagtg
tctcaactgttgacactgatggatgggttgaagtctcgtgctcatgtaattgtcattggg
gctacgaacatgccaaacactatcgatccagctcttagacgattcggtaggtttgacaga
gaaattgacattggtgttcctgatgaggttggccgattggaggttcttcacatccatact
aagaacatgaagctatctgatgatgttgatttggaaaggattgctaaggatactcatggc
tatgttggggttgaccttgctgctttatgcactaaagctgctctccagtgtatccgtgaa
aagatggacataattgatctagaagatgaatcaattgatgctgagattctcaattctatg
tctgtttcaaatgaacactttaagactgctttgagatttagtaacccatctgccctccgt
gaaactataagtctttgccttggttgttaa
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